Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B08
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    33   0.018
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    28   0.88 
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   1.5  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   2.7  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   3.5  
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf...    25   4.7  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   4.7  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   6.2  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   8.2  

>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 33.5 bits (73), Expect = 0.018
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
 Frame = +3

Query: 9    GNEAVEKSKGNVSNAEDTIEAAQKEISS-AMEYXXXXXXXXXXKARNRSDQFGKQSVDMS 185
            GN+  ++    +S+ E  +EAA K  S+ + E           K+ +  DQ  ++SV+  
Sbjct: 874  GNKLAKEHTEKISSLEKDLEAATKTASTLSKELKTVKSENDSLKSVSNDDQNKEKSVNNE 933

Query: 186  ALAKESRLLAEKLENEARNIRDIADKAFNTSLVANKIAKDGITKQANISNEVQILTNELN 365
               + S+ LAE   NE  N RD   +     ++       G+    N S  +Q L +  N
Sbjct: 934  KFKEVSQALAE--ANEKLNARDEEIERLKVDII-------GL---QNASLNMQSLKDSDN 981

Query: 366  AASGKLSSINELADQALKRA 425
                 L S N+  ++ LK A
Sbjct: 982  RTISDLESKNKELEKKLKEA 1001


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 1/149 (0%)
 Frame = +3

Query: 3   YDGNEAVEKSKGNVSNAEDTIEAAQKEISSA-MEYXXXXXXXXXXKARNRSDQFGKQSVD 179
           +D  + V+    N +   + I+   KE SS   EY              +S +    SV 
Sbjct: 13  HDDFKVVDSWINNGAKWLEDIQLYYKERSSIEKEYAQKLASLSNKYGEKKSRKSSALSVG 72

Query: 180 MSALAKESRLLAEKLENEARNIRDIADKAFNTSLVANKIAKDGITKQANISNEVQILTNE 359
            +       L    L   ++ + ++   +     +++  + D   K   + + ++ L   
Sbjct: 73  DTPAMSAGSLECASLTTWSKILDELTRSSKTHQKLSDDYSLDIAEKLKKLESHIEALRKV 132

Query: 360 LNAASGKLSSINELADQALKRAKVVYEEA 446
            +    K SS  E    ++KRAKV Y EA
Sbjct: 133 YDDLYKKFSSEKETLLNSVKRAKVSYHEA 161


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 207 LLAEKLENEARNIRDIADKAFNTSLVANKIAKDGITKQANISN 335
           L AEKLEN+A++ + I  KA   +  +  + K+ +  +  + N
Sbjct: 346 LEAEKLENQAQHKKRIIKKALEFNPTSVSLWKEAVNLEEEVDN 388


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 12  NEAVEKSKGNVSNAEDTIEAAQKEISSA 95
           ++ V+K KGNV NA +T  +    ISS+
Sbjct: 585 SDQVQKKKGNVPNAIETDSSPSDTISSS 612


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 288 NKIAKDGITKQANISNEV---QILTNELNAASGKLSSINELADQALK 419
           +K+ K  + K   + NE    Q++T      SGK + +N +AD+A K
Sbjct: 359 DKLPKQHLFKYRPVDNEATYCQVVTVTGEKGSGKSNLLNAVADEARK 405


>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
           protein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 249 DIADKAFNTSLVANKIAKDGITKQANIS 332
           DI DKA+  + V   +    ITKQA IS
Sbjct: 116 DICDKAYELAAVECPVEPGIITKQATIS 143


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 17/84 (20%), Positives = 38/84 (45%)
 Frame = +3

Query: 12   NEAVEKSKGNVSNAEDTIEAAQKEISSAMEYXXXXXXXXXXKARNRSDQFGKQSVDMSAL 191
            NE   + +   ++ ++  + ++ EI  A EY             + S +F       S +
Sbjct: 911  NELESEYEKLEADIQEMAQKSRTEILEANEYLHQLNEWNSELRIDVSTKFKCIKEKKSNI 970

Query: 192  AKESRLLAEKLENEARNIRDIADK 263
             +E R++A K+E+   N+R + ++
Sbjct: 971  GEEVRIIASKIESTDDNLRKLQER 994


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/68 (22%), Positives = 29/68 (42%)
 Frame = +3

Query: 195 KESRLLAEKLENEARNIRDIADKAFNTSLVANKIAKDGITKQANISNEVQILTNELNAAS 374
           K  +LL E + N+     D     ++   + N  +   +TK   IS+    +  ++N   
Sbjct: 156 KNKKLLREHMNNKRHFRLDPKSSEYDEFYIINYAS---VTKSITISHSQFAINEDINETD 212

Query: 375 GKLSSINE 398
             +S IN+
Sbjct: 213 DTISDIND 220


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 110 FQIFHCTTDLFLGRFNRILS 51
           FQIF C   LFLGR   IL+
Sbjct: 263 FQIFICIVLLFLGRAVNILA 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,269
Number of Sequences: 5004
Number of extensions: 26992
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)