Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B07
(405 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 47 1e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 1.1
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 26 1.9
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 26 2.6
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 26 2.6
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 23 5.1
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 5.9
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc... 25 5.9
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 24 7.8
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 24 7.8
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 46.8 bits (106), Expect = 1e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +2
Query: 215 KPDLKLKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLD 331
KP + KC CGQVGHM+TNK CPL+ G GG ++ LD
Sbjct: 941 KPTTR-KCSNCGQVGHMKTNKICPLF-GRPEGGLATMLD 977
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.1 bits (57), Expect = 1.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 146 IPLGQIKQEPDLLHTTSRRRAKLKPDLKLKCGACGQVGHMRTNKACP 286
+P GQ + + L + L+ D C CG VGH R + CP
Sbjct: 281 VPEGQNDLKRNQLRQLATLNGTLRDDENQVCQNCGNVGHRRFD--CP 325
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 1.9
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 287 LYTGSMAGGPSSPLDTDAEPTSIEPEDDDLGYV 385
L TGS+ G S LDT E S +PE+D L +V
Sbjct: 162 LLTGSV-DGLVSLLDTTKEEDSTDPEEDPLLHV 193
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 311 GPSSPLDTDAEPTSIEPEDDD 373
G ++PL D +PTS E+DD
Sbjct: 99 GKATPLSEDRKPTSNNEEEDD 119
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 2.6
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = -2
Query: 275 CLYAYDPLDRTHRTLTSNRASA*LVVATSCGG-----DPVPV*SDLTVSNPGMAKINPSS 111
C+ YD + R+LT L + +CGG DP + +T N +A +PS+
Sbjct: 385 CVLVYDLIRLFLRSLTELNVEMLLKIVLNCGGQLRSDDPTSLQDIVTEMNLLLASADPST 444
Query: 110 MT 105
++
Sbjct: 445 IS 446
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 22.6 bits (46), Expect(2) = 5.1
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +2
Query: 230 LKCGACGQVGH 262
+KC +CG++GH
Sbjct: 135 VKCYSCGKIGH 145
Score = 20.6 bits (41), Expect(2) = 5.1
Identities = 7/18 (38%), Positives = 9/18 (50%)
Frame = +2
Query: 236 CGACGQVGHMRTNKACPL 289
C C Q GH+ N P+
Sbjct: 159 CYKCNQPGHIAVNCTSPV 176
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 24.6 bits (51), Expect = 5.9
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 170 PV*SDLTVSNPGMAKINPSSMTSCSSYQKY*VLVL*RFQPVF 45
P+ SD TV P + + +T C+ Q + F P+F
Sbjct: 931 PIISDFTVFEPALHTVENFDLTDCADEQILLLSSFVNFVPLF 972
>SPAC5D6.04 |||auxin family transmembrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 24.6 bits (51), Expect = 5.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 98 SSYQKY*VLVL*RFQPVFPSLDSSLFFSVVP 6
S K+ VL+L F P SL +LF +VVP
Sbjct: 263 SKISKFIVLLLDFFSPPLYSLFIALFIAVVP 293
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 24.2 bits (50), Expect = 7.8
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Frame = +2
Query: 155 GQIKQEPDLLHTTSRRRAKLKPDLKLKCGACGQVGHMRT-----------NKACPLYTGS 301
G IKQ +LLH S+ + ++C V H+ + NK PL+ +
Sbjct: 38 GDIKQVDNLLHNKSKDECTHALFISIQCANVQMVKHILSVFDVDVNAYDKNKNTPLHLAA 97
Query: 302 MAG 310
MAG
Sbjct: 98 MAG 100
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 24.2 bits (50), Expect = 7.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 195 DVVWRRSGSCLI*PNG 148
D+ WRRSG L PNG
Sbjct: 16 DLGWRRSGHYLYKPNG 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,882
Number of Sequences: 5004
Number of extensions: 27619
Number of successful extensions: 70
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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