Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B07
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr...    41   4e-04
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical...    41   4e-04
AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical ...    31   0.31 
AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical ...    30   0.55 
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     29   1.3  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   3.9  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   3.9  

>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
            W04A8.7 protein.
          Length = 1792

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +2

Query: 218  PDL-KLKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDAEPTSI 355
            P+L K++C AC   GHM+TN+ CPLY       P +PL  + E ++I
Sbjct: 1261 PNLQKMRCSACHAYGHMKTNRNCPLY----GKDPLTPLKEEDEGSTI 1303


>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
            protein W04A8.7 protein.
          Length = 1792

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +2

Query: 218  PDL-KLKCGACGQVGHMRTNKACPLYTGSMAGGPSSPLDTDAEPTSI 355
            P+L K++C AC   GHM+TN+ CPLY       P +PL  + E ++I
Sbjct: 1261 PNLQKMRCSACHAYGHMKTNRNCPLY----GKDPLTPLKEEDEGSTI 1303


>AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical
           protein F07G11.4 protein.
          Length = 499

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 226 EVKVRCVRSSGSYAYKQGVSPVYRFYGWRTFFST*YGC 339
           +V ++CVR + +Y+  + + PV  +Y    +FS   GC
Sbjct: 459 QVNIKCVRVNATYSSMKKLMPVTYYYATDPYFSDEMGC 496


>AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical
           protein F07G11.3 protein.
          Length = 529

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 235 VRCVRSSGSYAYKQGVSPVYRFYGWRTFFST*YGC*TN 348
           ++C+R + +Y   + +SPV  +Y    +FS   GC  N
Sbjct: 492 IKCMRINATYTAMETLSPVTYYYATDPYFSDTMGCYAN 529


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = -2

Query: 347 LVQHPYQVEKKVLQP*NRYTGDTPCLYAYDPLDR----THRTLTSNRASA*LVVATSC-- 186
           +VQ PY +  + L   + ++  T CL + DPL +    T    TS R ++   V + C  
Sbjct: 430 IVQMPYGIILEELSTCSHHSSCTECLVSVDPLCQWCHPTQSCTTSARCTS--PVTSQCPI 487

Query: 185 -GGDPVPV*SDLTVSNP 138
             GDP+P    +  S P
Sbjct: 488 VDGDPIPSIVSVNSSTP 504


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = -2

Query: 347 LVQHPYQVEKKVLQP*NRYTGDTPCLYAYDPLDR----THRTLTSNRASA*LVVATSC-- 186
           +VQ PY +  + L   + ++  T CL + DPL +    T    TS R ++   V + C  
Sbjct: 432 IVQMPYGIILEELSTCSHHSSCTECLVSVDPLCQWCHPTQSCTTSARCTS--PVTSQCPI 489

Query: 185 -GGDPVPV*SDLTVSNP 138
             GDP+P    +  S P
Sbjct: 490 VDGDPIPSIVSVNSSTP 506


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 230 LKCGACGQVGHMRTNKACPLY 292
           ++C  C + GH+ T++ CPL+
Sbjct: 122 VRCCKCHKWGHINTDRECPLF 142


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 230 LKCGACGQVGHMRTNKACPLY 292
           ++C  C + GH+ T++ CPL+
Sbjct: 122 VRCCKCHKWGHINTDRECPLF 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,434,614
Number of Sequences: 27780
Number of extensions: 161586
Number of successful extensions: 525
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)