Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B06
         (577 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E49391 Cluster: PREDICTED: similar to receptor p...    37   0.39 
UniRef50_UPI0000F1F13E Cluster: PREDICTED: hypothetical protein,...    35   1.6  
UniRef50_A1ZKE2 Cluster: Leucine-rich repeat containing protein;...    34   2.8  
UniRef50_Q1EAB5 Cluster: Predicted protein; n=1; Coccidioides im...    33   6.4  
UniRef50_Q8MWH2 Cluster: Reticulocyte binding protein homolog 4;...    32   8.4  
UniRef50_Q8N402 Cluster: Hypothetical LOC388882; n=1; Homo sapie...    32   8.4  

>UniRef50_UPI0000E49391 Cluster: PREDICTED: similar to receptor
           protein Notch1; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to receptor protein Notch1 -
           Strongylocentrotus purpuratus
          Length = 299

 Score = 36.7 bits (81), Expect = 0.39
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +1

Query: 121 HQNLWRKRARPEAPTQPPPQHDKHRISALIGDNMMM 228
           H NL+R R  P  P  PPP  DKH I+ L  DN  +
Sbjct: 247 HHNLFRTRTPPPPP--PPPLQDKHTITQLSADNQSL 280


>UniRef50_UPI0000F1F13E Cluster: PREDICTED: hypothetical protein,
           partial; n=1; Danio rerio|Rep: PREDICTED: hypothetical
           protein, partial - Danio rerio
          Length = 209

 Score = 34.7 bits (76), Expect = 1.6
 Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = +1

Query: 139 KRARPEAPTQPPPQHDKHRISALIGDNM-MMKRETEYSTEHYALNLKSEKCEQ*LSSEIN 315
           ++  PEA  QPPP      +SA+ G  +  + RETE  T H    +K +K    LS    
Sbjct: 39  EKKAPEAAAQPPPP-----LSAVPGGFLKQLVRETEKETRHREPEIKEDKPPSKLS---- 89

Query: 316 CDNLVRNK*CLPYTTKLAPPIEISQIPLR 402
            DNLV+N   LP  T   PPI  +++ LR
Sbjct: 90  -DNLVQNF-LLPDET---PPILEAEMSLR 113


>UniRef50_A1ZKE2 Cluster: Leucine-rich repeat containing protein;
           n=1; Microscilla marina ATCC 23134|Rep: Leucine-rich
           repeat containing protein - Microscilla marina ATCC
           23134
          Length = 384

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -2

Query: 198 NTMFIVLWRGLSRCFRSCTFPPEVLMQPY 112
           NT+  +L RG+  C  + T PPEV+++PY
Sbjct: 117 NTVLELLGRGIRFCLENKTAPPEVILEPY 145


>UniRef50_Q1EAB5 Cluster: Predicted protein; n=1; Coccidioides
           immitis|Rep: Predicted protein - Coccidioides immitis
          Length = 251

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +1

Query: 112 VWLHQNLWRKRARPEAPTQPPPQHDKHRISAL 207
           +WLH+NL R  AR  +P  PPP H  HR +AL
Sbjct: 204 LWLHRNLERN-AR--SPIGPPPDHIMHRQAAL 232


>UniRef50_Q8MWH2 Cluster: Reticulocyte binding protein homolog 4; n=5;
            Plasmodium (Laverania)|Rep: Reticulocyte binding protein
            homolog 4 - Plasmodium falciparum
          Length = 1716

 Score = 32.3 bits (70), Expect = 8.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 332  ETSNAYLIQRNLPHPLKLVKFLSERI--FRLPYKDLIIICSCKSNREFFDKFNMVLWSKR 505
            +TSN  LI+  + + L++   L E I  F   YKDLII  + K N    D  ++V+    
Sbjct: 1179 DTSNIQLIKEQIKYFLQIFHILQENITTFENQYKDLIIKMNHKINNNLKDITHIVINDNN 1238

Query: 506  T 508
            T
Sbjct: 1239 T 1239


>UniRef50_Q8N402 Cluster: Hypothetical LOC388882; n=1; Homo
           sapiens|Rep: Hypothetical LOC388882 - Homo sapiens
           (Human)
          Length = 240

 Score = 32.3 bits (70), Expect = 8.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 115 WLHQNLWRKRARPEAPTQPPPQH 183
           W H   WRK+ +P+  ++ PP H
Sbjct: 53  WRHHGFWRKKIQPQEASEEPPAH 75


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,648,233
Number of Sequences: 1657284
Number of extensions: 8882977
Number of successful extensions: 21295
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21285
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)