Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B06
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   2.6  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   2.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   2.6  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   3.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   4.5  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   4.5  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.5  
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    25   7.9  

>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -2

Query: 264  CIMFSRVFSFSLHHHIITN*CTNTMFIVLWRGLSRCFRSCTFPPEV 127
            CI+ S    F    H+  N C+N   I    GL  C  S   PP +
Sbjct: 1073 CIVDSGKLIFYKSDHLDPNACSNVSPIHREFGLQSCLASPNLPPSI 1118


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 540 GTKACPYPVELVLLLHK 490
           GTK CPY + L LLL K
Sbjct: 705 GTKVCPYSIPLWLLLAK 721


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 407  IFRLPYKDLIIICSCKSNREFFDKFNMVLWSKRTSSTGYG-HAF 535
            I R  +K L ++C  +  ++  D  N+  WS +    GYG HAF
Sbjct: 1757 IHRFIFKILTLLCLSREVKQ--DSANISWWSGKWYGKGYGYHAF 1798


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 392 FLSERIFRLPYKDLIIICSCKSNREFFDKFNMVLWSK 502
           FL  +IF+   KD+  I   ++N + +++F    W+K
Sbjct: 772 FLQRKIFQKRLKDIQAIKLLQANLQVYNEFRTFPWAK 808


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 407  IFRLPYKDLIIICSCKSNREF-FDKFNMVLWSKRTSSTGYGH 529
            I R  +K  II   C  +REF  D  N+  WS R +  G+G+
Sbjct: 1559 IHRFAHKFFII---CFLSREFRHDGANLAWWSGRWNGQGFGY 1597


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 211  GDNMMMKRETEYSTEHYALNLKSEKCEQ*LSSEIN 315
            G+N+++  ETE    H A+ L  E+  + LSS ++
Sbjct: 907  GENIILSNETEVIENHLAILLIQEQYAEMLSSLVD 941


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 479 FNMVLWSKRTSST 517
           FNMV WSK +SST
Sbjct: 418 FNMVFWSKSSSST 430


>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 322 NLVRNK*CLPYTTKLAPPIEISQIPLRKNISSS 420
           NL RN   +    + AP + +  +P+R++ISSS
Sbjct: 3   NLWRNLKSVRLPFRRAPTLPLYNVPVRRSISSS 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,536
Number of Sequences: 5004
Number of extensions: 40160
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)