Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B06
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U50311-6|AAA92310.2|  496|Caenorhabditis elegans Cytochrome p450...    28   5.5  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    28   5.5  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      28   5.5  

>Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical
           protein F49H6.4 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = +3

Query: 417 FPIKI*LLFVLVKVTESFLTNLTWFYGVKEQVQQGMDMPLC 539
           FP++I   ++++K T + + +++W   +   +  G+D+ LC
Sbjct: 39  FPLQILAFYIIIKKTPTVMKSVSWPLLLNHSLCTGLDIGLC 79


>U50311-6|AAA92310.2|  496|Caenorhabditis elegans Cytochrome p450
           family protein 33B1 protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 118 LHQNLWRKRARPEAPTQPP 174
           +HQ LWR+R  P  PT  P
Sbjct: 15  IHQYLWRRRGLPPGPTPIP 33


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 341 NAYLIQRNLPHPL--KLVKFLSERIFRLPYKDLIIICSCKSNR 463
           N Y++ R+ P  +  K++ F+S++     +K++I    C +NR
Sbjct: 427 NRYIVPRDAPLNIFVKIIHFISQQKLDFAFKEIIFDLLCVNNR 469


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 341 NAYLIQRNLPHPL--KLVKFLSERIFRLPYKDLIIICSCKSNR 463
           N Y++ R+ P  +  K++ F+S++     +K++I    C +NR
Sbjct: 427 NRYIVPRDAPLNIFVKIIHFISQQKLDFAFKEIIFDLLCVNNR 469


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,120,859
Number of Sequences: 27780
Number of extensions: 230004
Number of successful extensions: 542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)