Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B05
(504 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 136 1e-33
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 80 2e-16
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 71 1e-13
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 66 4e-12
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 28 0.69
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 28 0.92
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.2
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 27 1.2
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 27 1.6
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 1.6
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 1.6
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 26 3.7
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 3.7
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 25 6.5
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 6.5
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 25 6.5
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po... 25 8.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 136 bits (330), Expect = 1e-33
Identities = 58/78 (74%), Positives = 68/78 (87%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GG YV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 305 PRAVLVDLEPGTMDSVRS 358
PRAVLVDLEPGTMD+V+S
Sbjct: 61 PRAVLVDLEPGTMDAVKS 78
Score = 37.1 bits (82), Expect = 0.001
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +1
Query: 439 NFGLSGHYTEGAELVDSVLDVV 504
N GHYTEGAEL D+VLDVV
Sbjct: 99 NIWAKGHYTEGAELADAVLDVV 120
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 80.2 bits (189), Expect = 2e-16
Identities = 33/77 (42%), Positives = 54/77 (70%)
Frame = +2
Query: 128 REIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYVP 307
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 308 RAVLVDLEPGTMDSVRS 358
RA+L+DLEP ++++ S
Sbjct: 63 RAILIDLEPRVVNNILS 79
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 70.9 bits (166), Expect = 1e-13
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGT 298
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 299 YVPRAVLVDLEPGTMDSVRS 358
YVPR++ VDLEP +D VR+
Sbjct: 61 YVPRSIYVDLEPNVIDQVRT 80
Score = 30.3 bits (65), Expect = 0.17
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLDVV 504
A NN+ GHYT G ELVD V D +
Sbjct: 99 ASNNYA-RGHYTVGKELVDEVTDKI 122
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 65.7 bits (153), Expect = 4e-12
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 286
MRE++ V GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 287 SGGTYVPRAVLVDLEPGTMDSVRS 358
G +VPR++ VDLEP +D VR+
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRT 84
Score = 30.7 bits (66), Expect = 0.13
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLD 498
A NN+ GHYT G E++DSVL+
Sbjct: 103 ASNNYA-RGHYTVGKEMIDSVLE 124
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 28.3 bits (60), Expect = 0.69
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 144 SRPDNAETRSELSSGRSSLMNMELIPLAHTMVTLTYSWSVLMFITMKHPEALMYLAPFLL 323
++ D + +L+ G + L ++I + T VTL L + P+ L+ AP L
Sbjct: 157 AKEDGRDAIIDLTRGLADLCTKKVI--SSTQVTLELIDKELKESVIPEPDLLIIFAPLLK 214
Query: 324 TSSLAPWTL 350
PW L
Sbjct: 215 LQGFPPWQL 223
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 27.9 bits (59), Expect = 0.92
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 223 SGINSMFIRDDLPELSSDLVSALSGLDVDDFPHLYLCE 110
+ I+ + + D L +L S L++A++ D DD +CE
Sbjct: 345 NSISGLSVIDVLRDLGSHLINAVNSFDADDQTWYNMCE 382
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.2
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = +2
Query: 239 DSDLQLERINV--YYNEAS--GGT--YVPRAVLVDLEPGTMDSVRSRNPFGTKSFSAPEI 400
DS +L+R YY A+ GGT Y A ++ S S P T S+S+P
Sbjct: 46 DSQEELQRRQEIRYYGRAAETGGTPTYYGYATPTSSSEPSIFS-ESATPSETNSYSSPVS 104
Query: 401 NFDFPETVRLPVTTLG*ADTTQRVLSSSIPS 493
++ P T +LP +T + T+ SS S
Sbjct: 105 SYSDPATSQLPSSTSFFSPTSSEYTPSSTES 135
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -1
Query: 210 PCSSEMISQNLA-PIWFPHCPAWTW 139
P SSE I Q LA + PH WTW
Sbjct: 263 PSSSEEIYQKLANEVDVPHAALWTW 287
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 46 FNRPDRTINVTREILSNNFY*LHINKDEGNRPRPGRTMRKP 168
F+RP T NV L+N F L NKD + P T++ P
Sbjct: 203 FSRPPPTPNVAGLSLNNFFCPLPENKDNKSSPFGSATVQTP 243
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 164 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 265
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 431 PVTTLG*ADTTQRVLSSSIPSW 496
PV LG A+T Q LSS++ SW
Sbjct: 802 PVMLLGFANTNQEKLSSTVRSW 823
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 207 MELIPLAHTMVTLTYSWSVLMFI 275
M+ PL + +T+SWSV++F+
Sbjct: 161 MQTFPLGKFVGLVTFSWSVIVFL 183
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 3.7
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 502 LHPRRNRRAQHPLCSVRLAQSCYRQPDCFRKIEVNFGGRKRFCSKRVP 359
LHP R R+Q P + + YRQ + EVN K+ SK P
Sbjct: 103 LHPLRPVRSQTPAYTPMTTRMMYRQTRGAQS-EVNLSTPKQIYSKHSP 149
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 308 RAVLVDLEPGTMDSVRSRNPFGTK-SFSAPEI 400
R ++++ EPGT S NP G S +A E+
Sbjct: 291 REIMLNFEPGTHGSTYGGNPLGAAVSIAALEV 322
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 6.5
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = +2
Query: 191 IISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV--PRAVL----VDLEPGTMDSV 352
I+ +HG+D G + GDS ++ + Y++ Y+ P VL VDL P +
Sbjct: 281 IVMGDHGMDNKGNHGGDSFDEINSVLWMYSKKPTFGYLKQPGKVLSANQVDLVPTLSLLL 340
Query: 353 RSRNPFGTKSFSAPE 397
+ P+G PE
Sbjct: 341 GNPIPYGNLGTLIPE 355
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 25.0 bits (52), Expect = 6.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 168 WFPHCPAWTWTI 133
WF HCP WT+
Sbjct: 7 WFIHCPPLQWTL 18
>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 220
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 177 LSSGRSSLMNMELIPLAHTMVTLTYSWSVLMFITMKHPE 293
+SSG S+L E++P+ + ++ Y W ++ HP+
Sbjct: 22 ISSGESAL---EVVPVINRLLENDYKWDTVIATKDVHPK 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,125
Number of Sequences: 5004
Number of extensions: 47527
Number of successful extensions: 158
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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