Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B05
(504 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 165 2e-41
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 158 2e-39
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 155 2e-38
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 155 2e-38
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 151 3e-37
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 150 6e-37
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 111 2e-25
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 111 2e-25
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 76 1e-14
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 75 2e-14
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 75 2e-14
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 73 9e-14
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 73 9e-14
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 73 9e-14
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 73 2e-13
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 73 2e-13
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 72 2e-13
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 72 2e-13
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 72 2e-13
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 71 6e-13
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 70 8e-13
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 67 8e-12
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 67 8e-12
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 66 2e-11
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 64 7e-11
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 54 6e-08
AL032631-1|CAB63336.1| 453|Caenorhabditis elegans Hypothetical ... 30 0.83
AC024793-4|AAF60694.2| 318|Caenorhabditis elegans Hypothetical ... 29 1.4
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z66561-3|CAA91455.1| 422|Caenorhabditis elegans Hypothetical pr... 28 4.4
U39855-3|AAA81082.1| 467|Caenorhabditis elegans Patterned expre... 27 5.8
U80442-4|AAB37667.1| 226|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 165 bits (400), Expect = 2e-41
Identities = 75/83 (90%), Positives = 79/83 (95%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MREIVH+QAGQCGNQIGAKFWE+ISDEHGIDPTGAY+GDSDLQLERINVYYNEASGG YV
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDLQLERINVYYNEASGGKYV 60
Query: 305 PRAVLVDLEPGTMDSVRSRNPFG 373
PRA LVDLEPGTMDSVR+ PFG
Sbjct: 61 PRACLVDLEPGTMDSVRA-GPFG 82
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLDVV 504
AGNN+ GHYTEGAELVD+VLDVV
Sbjct: 97 AGNNWA-KGHYTEGAELVDNVLDVV 120
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 158 bits (384), Expect = 2e-39
Identities = 73/83 (87%), Positives = 76/83 (91%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MREIVHVQAGQCGNQIGAKFWE+ISDEHGI P G Y G+SDLQLERINVYYNEA+GG YV
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDLQLERINVYYNEANGGKYV 60
Query: 305 PRAVLVDLEPGTMDSVRSRNPFG 373
PRAVLVDLEPGTMDSVRS PFG
Sbjct: 61 PRAVLVDLEPGTMDSVRS-GPFG 82
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLDVV 504
AGNN+ GHYTEGAELVD+VLDVV
Sbjct: 97 AGNNWA-KGHYTEGAELVDNVLDVV 120
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 155 bits (376), Expect = 2e-38
Identities = 71/83 (85%), Positives = 75/83 (90%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MREIVH+QAGQCGNQIG+KFWE+ISDEHGIDP+G Y GDSDLQLERINVYYNEA YV
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAGSNKYV 60
Query: 305 PRAVLVDLEPGTMDSVRSRNPFG 373
PRAVLVDLEPGTMDSVRS PFG
Sbjct: 61 PRAVLVDLEPGTMDSVRS-GPFG 82
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLDVV 504
AGNN+ GHYTEGAELVD+VLDVV
Sbjct: 97 AGNNWA-KGHYTEGAELVDNVLDVV 120
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 155 bits (376), Expect = 2e-38
Identities = 71/83 (85%), Positives = 75/83 (90%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MREIVH+QAGQCGNQIG+KFWE+ISDEHGIDP+G Y GDSDLQLERINVYYNEA YV
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAGSNKYV 60
Query: 305 PRAVLVDLEPGTMDSVRSRNPFG 373
PRAVLVDLEPGTMDSVRS PFG
Sbjct: 61 PRAVLVDLEPGTMDSVRS-GPFG 82
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLDVV 504
AGNN+ GHYTEGAELVD+VLDVV
Sbjct: 97 AGNNWA-KGHYTEGAELVDNVLDVV 120
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 151 bits (366), Expect = 3e-37
Identities = 69/83 (83%), Positives = 75/83 (90%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MREIVHVQAGQCGNQIG+KFWE+ISDEHGI P G + G+SDLQLERI+VYYNEA+ G YV
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDLQLERIDVYYNEANNGKYV 60
Query: 305 PRAVLVDLEPGTMDSVRSRNPFG 373
PRAVLVDLEPGTMDSVRS PFG
Sbjct: 61 PRAVLVDLEPGTMDSVRS-GPFG 82
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLDVV 504
AGNN+ GHYTEGAELVD+VLDV+
Sbjct: 97 AGNNWA-KGHYTEGAELVDNVLDVI 120
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 150 bits (363), Expect = 6e-37
Identities = 68/83 (81%), Positives = 75/83 (90%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MREIVHVQAGQCGNQIG+KFWE+ISDEHGI P G + G++DLQLERI+VYYNEA+ G YV
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQLERIDVYYNEANNGKYV 60
Query: 305 PRAVLVDLEPGTMDSVRSRNPFG 373
PRAVLVDLEPGTMDSVRS PFG
Sbjct: 61 PRAVLVDLEPGTMDSVRS-GPFG 82
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLDVV 504
AGNN+ GHYTEGAELVD+VLDV+
Sbjct: 97 AGNNWA-KGHYTEGAELVDNVLDVI 120
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 111 bits (268), Expect = 2e-25
Identities = 49/78 (62%), Positives = 60/78 (76%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
M+EI++VQ GQCGNQIGAKFWE IS+EHG+ G Y GD+ QLERI YY E G YV
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEMEGRKYV 60
Query: 305 PRAVLVDLEPGTMDSVRS 358
PRA+LVDL+P +++ VRS
Sbjct: 61 PRAILVDLDPESINYVRS 78
Score = 33.5 bits (73), Expect = 0.089
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +1
Query: 385 FGPRN*LRFSGNSPVAGNNFGLSGHYTEGAELVDSVLDVV 504
F P N SG S AGNN+ G+Y +GAE+VD VL V+
Sbjct: 85 FDPEN--AVSGESG-AGNNWS-RGYYEQGAEIVDKVLSVI 120
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 111 bits (268), Expect = 2e-25
Identities = 49/78 (62%), Positives = 60/78 (76%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
M+EI++VQ GQCGNQIGAKFWE IS+EHG+ G Y GD+ QLERI YY E G YV
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEMEGRKYV 60
Query: 305 PRAVLVDLEPGTMDSVRS 358
PRA+LVDL+P +++ VRS
Sbjct: 61 PRAILVDLDPESINYVRS 78
Score = 33.5 bits (73), Expect = 0.089
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +1
Query: 385 FGPRN*LRFSGNSPVAGNNFGLSGHYTEGAELVDSVLDVV 504
F P N SG S AGNN+ G+Y +GAE+VD VL V+
Sbjct: 85 FDPEN--AVSGESG-AGNNWS-RGYYEQGAEIVDKVLSVI 120
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 76.2 bits (179), Expect = 1e-14
Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Frame = +2
Query: 128 REIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL---QLERINVYYNEASGGT 298
RE++ + GQ G QIG WE+ EHGI P G YH + D + E IN ++ E +GG
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDG-YHVEDDTYDEETETINTFFAETAGGK 66
Query: 299 YVPRAVLVDLEPGTMDSVRS 358
+VPR + VDLEP +D VR+
Sbjct: 67 HVPRCLFVDLEPTVVDEVRT 86
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 75.4 bits (177), Expect = 2e-14
Identities = 31/78 (39%), Positives = 44/78 (56%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MRE++ + GQ G QIG WE+ EHGI P G D E ++++ G YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTGNGRYV 60
Query: 305 PRAVLVDLEPGTMDSVRS 358
PR++ VDLEP +D +R+
Sbjct: 61 PRSIFVDLEPTVVDEIRT 78
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLD 498
A NN+ GHYT G EL+D+VLD
Sbjct: 97 AANNYA-RGHYTVGKELIDTVLD 118
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 75.4 bits (177), Expect = 2e-14
Identities = 31/78 (39%), Positives = 44/78 (56%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MRE++ + GQ G QIG WE+ EHGI P G D E ++++ G YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTGNGRYV 60
Query: 305 PRAVLVDLEPGTMDSVRS 358
PR++ VDLEP +D +R+
Sbjct: 61 PRSIFVDLEPTVVDEIRT 78
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLD 498
A NN+ GHYT G EL+D+VLD
Sbjct: 97 AANNYA-RGHYTVGKELIDTVLD 118
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 73.3 bits (172), Expect = 9e-14
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MRE++ + GQ G QIG WE+ EHGI P G S + E ++++ G YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYV 60
Query: 305 PRAVLVDLEPGTMDSVRS 358
PR++ VDLEP +D +R+
Sbjct: 61 PRSIFVDLEPTVVDEIRT 78
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLD 498
A NN+ GHYT G EL+D+VLD
Sbjct: 97 AANNYA-RGHYTVGKELIDTVLD 118
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 73.3 bits (172), Expect = 9e-14
Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGT 298
MREIV + GQ G QIG WE+ EHGI P G D+ +E N +++E G
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK 60
Query: 299 YVPRAVLVDLEPGTMDSVRS 358
+VPRA+ VDLEP +D VR+
Sbjct: 61 HVPRAIFVDLEPTVIDEVRT 80
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLDVV 504
A NN+ GHYT G EL+D V+D V
Sbjct: 99 AANNYA-RGHYTIGKELIDVVMDRV 122
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 73.3 bits (172), Expect = 9e-14
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MRE++ + GQ G QIG WE+ EHGI P G S + E ++++ G YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYV 60
Query: 305 PRAVLVDLEPGTMDSVRS 358
PR++ VDLEP +D +R+
Sbjct: 61 PRSIFVDLEPTVVDEIRT 78
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLD 498
A NN+ GHYT G EL+D+VLD
Sbjct: 97 AANNYA-RGHYTVGKELIDTVLD 118
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 72.5 bits (170), Expect = 2e-13
Identities = 30/80 (37%), Positives = 45/80 (56%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MRE++ + GQ G QIG WE+ EHGI P G + + ++++ G YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRYV 60
Query: 305 PRAVLVDLEPGTMDSVRSRN 364
PR++ VDLEP +D +R+ N
Sbjct: 61 PRSIFVDLEPTVVDEIRTGN 80
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLD 498
A NN+ GHYT G EL+D+ LD
Sbjct: 97 AANNYA-RGHYTVGKELIDTTLD 118
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 72.5 bits (170), Expect = 2e-13
Identities = 30/80 (37%), Positives = 45/80 (56%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MRE++ + GQ G QIG WE+ EHGI P G + + ++++ G YV
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTGNGRYV 60
Query: 305 PRAVLVDLEPGTMDSVRSRN 364
PR++ VDLEP +D +R+ N
Sbjct: 61 PRSIFVDLEPTVVDEIRTGN 80
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLD 498
A NN+ GHYT G EL+D+ LD
Sbjct: 97 AANNYA-RGHYTVGKELIDTTLD 118
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGT 298
MRE++ + GQ G QIG WE+ EHGI P G D L + + +++E G
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 299 YVPRAVLVDLEPGTMDSVRS 358
+VPRAV+VDLEP +D +R+
Sbjct: 61 HVPRAVMVDLEPTVIDEIRT 80
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGT 298
MRE++ + GQ G QIG WE+ EHGI P G D L + + +++E G
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 299 YVPRAVLVDLEPGTMDSVRS 358
+VPRAV+VDLEP +D +R+
Sbjct: 61 HVPRAVMVDLEPTVIDEIRT 80
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGT 298
MRE++ + GQ G QIG WE+ EHGI P G D L + + +++E G
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGR 60
Query: 299 YVPRAVLVDLEPGTMDSVRS 358
+VPRAV+VDLEP +D +R+
Sbjct: 61 HVPRAVMVDLEPTVIDEIRT 80
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 70.5 bits (165), Expect = 6e-13
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Frame = +2
Query: 122 KMREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGG 295
+ RE++ + GQ G Q+G WE+ EHGI P G + + L + + N +++E G
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAG 64
Query: 296 TYVPRAVLVDLEPGTMDSVRS 358
+VPRA++VDLEP +D +R+
Sbjct: 65 KHVPRAIMVDLEPTPIDEIRT 85
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLDVV 504
A NN+ GHYT G E++D V+D V
Sbjct: 104 AANNYA-RGHYTIGKEIIDVVMDRV 127
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 70.1 bits (164), Expect = 8e-13
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +2
Query: 128 REIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGTY 301
RE++ + GQ G QIG WE+ EHGI P G D L + + +++E G +
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRH 60
Query: 302 VPRAVLVDLEPGTMDSVRS 358
VPRAV+VDLEP +D +R+
Sbjct: 61 VPRAVMVDLEPTVIDEIRT 79
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 66.9 bits (156), Expect = 8e-12
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Frame = +2
Query: 134 IVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYVPRA 313
++ V GQCGNQ+ FW+ + DEHGI+ G + D+ ++ ++Y +A YVPRA
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFY-QADDDHYVPRA 65
Query: 314 VLVDLEP----GTMDSVRSRNPFGT 376
VLVDLEP G M S N F T
Sbjct: 66 VLVDLEPRVINGMMQSPNFSNLFNT 90
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 66.9 bits (156), Expect = 8e-12
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Frame = +2
Query: 134 IVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYVPRA 313
++ V GQCGNQ+ FW+ + DEHGI+ G + D+ ++ ++Y +A YVPRA
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFY-QADDDHYVPRA 65
Query: 314 VLVDLEP----GTMDSVRSRNPFGT 376
VLVDLEP G M S N F T
Sbjct: 66 VLVDLEPRVINGMMQSPNFSNLFNT 90
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 65.7 bits (153), Expect = 2e-11
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 128 REIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAY-HGDSDLQLERINVYYNEASGGTYV 304
RE V + GQ G QIG WE+ EHG+D G + + + + + +++E+ G +V
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEKNKKQQSLQAFFSESMNGKHV 65
Query: 305 PRAVLVDLEPGTMDSVRS 358
PRA+ VDLEP +D +R+
Sbjct: 66 PRAIYVDLEPTVLDEIRN 83
Score = 30.3 bits (65), Expect = 0.83
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 430 AGNNFGLSGHYTEGAELVDSVLD 498
A NN+ GHYT G EL+D VLD
Sbjct: 102 AANNYA-RGHYTIGKELIDVVLD 123
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 63.7 bits (148), Expect = 7e-11
Identities = 29/78 (37%), Positives = 45/78 (57%)
Frame = +2
Query: 125 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 304
MRE++ + GQ G QIG WE+ EHGI P G + D + ++++ G +V
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDGT-SMEPDGNSGSLGTFFSDTGYGRHV 59
Query: 305 PRAVLVDLEPGTMDSVRS 358
PR++ VDLEP +D +R+
Sbjct: 60 PRSIFVDLEPTVVDEIRT 77
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 54.0 bits (124), Expect = 6e-08
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Frame = +2
Query: 203 EHGIDPTGAYHGDSDL---QLERINVYYNEASGGTYVPRAVLVDLEPGTMDSVRS 358
EHGI P G YH + D + E IN ++ E +GG +VPR + VDLEP +D VR+
Sbjct: 5 EHGIQPDG-YHVEDDTYDEETETINTFFAETAGGKHVPRCLFVDLEPTVVDEVRT 58
>AL032631-1|CAB63336.1| 453|Caenorhabditis elegans Hypothetical
protein Y106G6H.1 protein.
Length = 453
Score = 30.3 bits (65), Expect = 0.83
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = -3
Query: 400 NFGGRKRFCSKRVPGADRVHGARLEVNKNGARYISASGCFIVININTLQL*VRVTMVCAS 221
+F K C+ PG D + AR+ + + C + N+ ++ ++ M+ +
Sbjct: 254 HFPKPKAICTAIAPGCDDDYAARVLNLTESVVCLECTACMSITNVLQHKIFLQPAMLDQT 313
Query: 220 GINSMFIRDDL-PELSSDLVSALSGLDVDDFPH 125
++R +L L ++L A GLD+ FPH
Sbjct: 314 ---YYWLRGNLFHNLCAELCLAFQGLDIPLFPH 343
>AC024793-4|AAF60694.2| 318|Caenorhabditis elegans Hypothetical
protein Y48G1BL.1 protein.
Length = 318
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -3
Query: 496 PRRNRRAQHPLCSVRLAQSCYRQPDCFRKIEV---NFGG-RKRFCSKRVPGA 353
PR +RR + +L +R+ K V G RKRFCS R PGA
Sbjct: 17 PRGSRRRSRKTFTAKLTSPTFRRWSSTEKWTVASREIGSARKRFCSTRTPGA 68
>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
protein K01A6.2 protein.
Length = 1092
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 191 IISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYVPRAVLVDL 328
I S+ H I T + H DS R + GG + R +L+D+
Sbjct: 101 IASEHHHISTTSSCHSDSGNSSSRDVITPFTVHGGASIGRLILIDI 146
>Z66561-3|CAA91455.1| 422|Caenorhabditis elegans Hypothetical
protein F08G12.3 protein.
Length = 422
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 267 MFITMKHPEALMYLAPFLLTSSLAPWTLSAPGTLLEQNLF 386
+ T PE M + + + L P TLS+PG + E+ F
Sbjct: 213 LMYTFPKPEGAMQTLNYNVHNGLGPSTLSSPGKIKEKKSF 252
>U39855-3|AAA81082.1| 467|Caenorhabditis elegans Patterned
expression site protein 8 protein.
Length = 467
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +3
Query: 180 SSGRSSLMNMELIPLAHTMVTLTYSWSVLMFITMKHPEALMYLAPFLLTSSLAPWTLSAP 359
S R + L+P T+ + + M+I E +P LTS L P+ S
Sbjct: 77 SYNRPGAIKRTLVPFVAAHTTINFECEIEMYICSGCAERSCETSPLALTSKLTPFGKSTT 136
Query: 360 GTLL 371
L+
Sbjct: 137 VALM 140
>U80442-4|AAB37667.1| 226|Caenorhabditis elegans Hypothetical
protein T20F5.5 protein.
Length = 226
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 417 SGKSKLISGAEKDFVPKGFLERTESMVPGSRSTRTAR 307
S KSK+ SG EKD +P ++ S+ P +++ R
Sbjct: 37 SDKSKVSSGYEKDVLPSKSMKMKVSISPDKSASKKLR 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,404,342
Number of Sequences: 27780
Number of extensions: 273461
Number of successful extensions: 841
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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