Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B04
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    29   0.40 
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    29   0.40 
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    29   0.53 
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   0.70 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    27   1.2  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    27   2.1  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   2.8  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   3.7  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   4.9  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.9  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    25   6.5  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.6  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   8.6  

>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +2

Query: 269 IDEELVVLNKIST--EPPKCNFCDQTFQKIGDAFRHVLSSVEHQTAVAEAMLSDNRGDII 442
           ++  +V+L + S+   PP  NF    +    DA R  L  VE    + +A+ +DNR D+I
Sbjct: 723 LEAVMVLLQQASSVQAPPGANFSMIDYV---DALR--LGIVEAYVGITQAVRTDNRLDLI 777

Query: 443 SVYMKGNFVL 472
             Y+   F L
Sbjct: 778 QPYVHSMFTL 787


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 444 LIISPLLSDNIASATAV*CSTLDNTCLNASPIFWK 340
           L+I+ +L +   S      +TLD TC+  SP+ WK
Sbjct: 98  LVITVILENITDSPWNAYLNTLDETCMPDSPLLWK 132


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 131 GNYYICTICPDHVALPSFSSIY 196
           G+YY+C + PD +A  S +++Y
Sbjct: 214 GSYYLCDVIPDKLAAISINTLY 235


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 272 DEELVVLNKISTEPPKCNFCDQTFQKIGDAFRHVLSSVEH 391
           +EE ++L+ +      C  C++ FQ  G   +H+  S+ H
Sbjct: 390 EEEKLLLHFVWKSALICVLCERKFQSWGHVVKHITQSIMH 429


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 434 HLCCQITSLQPRRFDVRRL 378
           HLCCQ+T+ +P + +V+ +
Sbjct: 63  HLCCQVTASEPSQLNVQSI 81


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 161 DHVALPSFSSIYEHIESSTHIETVCKLIRSALHPSDIDE 277
           D +  P F    +HI S+     +CK + SA  PS ++E
Sbjct: 199 DRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEE 237


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +2

Query: 299 ISTEPPKCNFCDQTFQKIGDAFRHVLSSVEHQTAVAEAMLSDNRGDIISVYMKGN 463
           +S  P +C+ C   F +  D  RH+      +  V E +   NR D ++ + + N
Sbjct: 468 LSDRPYRCDLCKAGFVRHHDLKRHLRIHENGRPYVCECLKRFNRLDALNRHKQRN 522


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 113 EYFASFGNYYICT 151
           EY  SFGN YICT
Sbjct: 45  EYSKSFGNAYICT 57


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = -3

Query: 85  NIQLPRCRITEMLFLAY--MVEQYLP 14
           N ++  C++TE+L L Y  +++QY+P
Sbjct: 751 NDRVSACKLTELLMLNYRGLLDQYVP 776


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 137 NSRTTQSIPMGGNDSYTQYPTSS 69
           NS TT S+P  G+ S++   TSS
Sbjct: 206 NSDTTSSVPKSGSTSFSANVTSS 228


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 140 SNSRTTQSIPMGGNDSYTQYPTSS 69
           SN+    SI  GG +S  Q PTSS
Sbjct: 357 SNTAAFSSISFGGFNSLNQLPTSS 380


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 15/71 (21%), Positives = 32/71 (45%)
 Frame = +2

Query: 53  LRNTAPRKLDIVYRNHCRPSEYFASFGNYYICTICPDHVALPSFSSIYEHIESSTHIETV 232
           ++NT   + D+++ +  R S+Y  + G YY     P  +   S   I E+ +       +
Sbjct: 154 MQNTQSSETDVMF-DCMRTSQYPVTSGYYYETGGHPSELRKLSIEKIREYHKEMYVPSNI 212

Query: 233 CKLIRSALHPS 265
           C ++   ++ S
Sbjct: 213 CLIVTGCINES 223


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 314 PKCNFCDQTFQKIGDAFRH 370
           PKC FC+  F    + F+H
Sbjct: 245 PKCEFCNTHFYDDDELFKH 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,919
Number of Sequences: 5004
Number of extensions: 49429
Number of successful extensions: 139
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)