Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B04
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0311 + 2452230-2452232,2452401-2452809,2454136-2454263,245... 33 0.13
11_03_0056 + 9373608-9374004,9374065-9374105 32 0.30
06_03_1337 + 29434240-29434449,29434504-29434675,29435067-294351... 31 0.40
06_02_0369 - 15260013-15260273,15260367-15260516,15261518-152615... 31 0.53
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 31 0.53
05_07_0224 + 28500745-28500978,28501933-28502332,28502416-285024... 30 0.93
05_07_0139 - 27968816-27968890,27969065-27969456,27969558-279696... 30 0.93
01_06_0168 + 27165323-27165373,27166659-27167067,27167666-271677... 30 0.93
04_03_0138 + 11710595-11711271,11711533-11711665,11711819-117119... 30 1.2
02_01_0278 - 1851338-1851412,1851579-1851819,1851946-1852047,185... 29 1.6
01_05_0782 - 25148733-25149166,25149252-25149415,25149636-251496... 29 2.1
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546... 29 2.8
05_07_0262 + 28769335-28769391,28769732-28769855,28770175-287702... 28 3.7
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 28 5.0
04_04_1100 + 30894575-30895012,30896082-30897044 28 5.0
01_06_0539 + 30077249-30078739 28 5.0
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 27 6.5
08_01_0911 - 8976912-8977127,8977743-8977867,8977937-8978058,897... 27 6.5
07_03_1004 + 23244479-23244648,23245104-23245276,23245535-232456... 27 8.7
01_07_0086 - 40992187-40992468,40992670-40992753,40992869-409930... 27 8.7
01_06_1527 - 38006174-38006815,38006920-38007420 27 8.7
>05_01_0311 +
2452230-2452232,2452401-2452809,2454136-2454263,
2455287-2455436,2455526-2455681,2455775-2455986,
2456306-2456407,2456517-2456653,2456769-2457055
Length = 527
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 161 DHVALPSFSSIYEHIESSTHIETVCKLIRSALHPSDIDEELVVL 292
D VA+ + I+EH+ +T I KL+R HP ++ + ++L
Sbjct: 42 DKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILL 85
>11_03_0056 + 9373608-9374004,9374065-9374105
Length = 145
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 131 GNY-YICTICPDH----VALPSFSSIYEHIESSTHIETVCKLIRSALHPSDIDEELVVL 292
G+Y +C+ H VA+ + I+EH+ +T I KL+R HP ++ + ++L
Sbjct: 22 GSYGVVCSALDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILL 80
>06_03_1337 +
29434240-29434449,29434504-29434675,29435067-29435152,
29435351-29435759,29435893-29436020,29436094-29436153,
29436501-29436650,29436771-29436926,29437045-29437182,
29437270-29437343,29437752-29437853,29437951-29438191,
29438651-29438668
Length = 647
Score = 31.5 bits (68), Expect = 0.40
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 161 DHVALPSFSSIYEHIESSTHIETVCKLIRSALHPSDIDEELVVL 292
+ VA+ + ++EH+ +T I KL+R HP ++ + ++L
Sbjct: 197 ERVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIML 240
>06_02_0369 -
15260013-15260273,15260367-15260516,15261518-15261577,
15262114-15262241,15262559-15262654,15262655-15263039
Length = 359
Score = 31.1 bits (67), Expect = 0.53
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 161 DHVALPSFSSIYEHIESSTHIETVCKLIRSALHPSDIDEELVVLNKISTEPPKCNFCD 334
+ VA+ +I+EHI + I KL+R HP ++V + I P K +F D
Sbjct: 33 EKVAIKKIHNIFEHISDAARILREIKLLRLLRHP-----DIVEIKHIMLPPSKMDFRD 85
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 31.1 bits (67), Expect = 0.53
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 167 VALPSFSSIYEHIESSTHIETVCKLIRSALHPSDIDEELVVL 292
VA+ + ++EHI +T I KL+R HP ++ + ++L
Sbjct: 141 VAIKKINDVFEHISDATRILREIKLLRLLRHPDIVEIKHIML 182
>05_07_0224 +
28500745-28500978,28501933-28502332,28502416-28502480,
28502633-28502692,28502865-28503014,28503386-28503541,
28503648-28503785,28503874-28503947,28504172-28504273,
28505415-28505604,28505756-28505830
Length = 547
Score = 30.3 bits (65), Expect = 0.93
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +2
Query: 161 DHVALPSFSSIYEHIESSTHIETVCKLIRSALHPSDIDEELVVL 292
+ VA+ + +++H+ +T I KL+R HP ++ + ++L
Sbjct: 116 ERVAIKKINDVFDHVSDATRILREIKLLRLLRHPDIVEIKHIML 159
>05_07_0139 -
27968816-27968890,27969065-27969456,27969558-27969640,
27969841-27969933,27970012-27970223,27970604-27970753,
27971195-27971254,27971369-27971496,27972008-27972416,
27973514-27973570
Length = 552
Score = 30.3 bits (65), Expect = 0.93
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 161 DHVALPSFSSIYEHIESSTHIETVCKLIRSALHPSDIDEELVVL 292
D VA+ +I+EH+ + I KL+R HP ++ + ++L
Sbjct: 60 DKVAIKKIHNIFEHLSDAARILREIKLLRLLRHPDIVEIKHIML 103
>01_06_0168 +
27165323-27165373,27166659-27167067,27167666-27167793,
27167905-27167964,27169126-27169275,27169358-27169513,
27169643-27169854,27169983-27170084,27170351-27170430,
27170515-27170939
Length = 590
Score = 30.3 bits (65), Expect = 0.93
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 161 DHVALPSFSSIYEHIESSTHIETVCKLIRSALHPSDIDEELVVL 292
D VA+ +I+EH+ + I KL+R HP ++ + ++L
Sbjct: 58 DKVAIKKIHNIFEHLSDAARILREIKLLRLLRHPDIVEIKHIML 101
>04_03_0138 +
11710595-11711271,11711533-11711665,11711819-11711926,
11712307-11712354,11713191-11713250
Length = 341
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +2
Query: 53 LRNTAPRKLDIVYRNHCRPSEYFAS--FGNYYICTICPDHVALPSFSSIYEHIES-STHI 223
L P +L +VY + A F NY + P + H+ + S H+
Sbjct: 239 LERATPAELAMVYEEIVPHAHMLAIDVFANYALLGYGPTFYRRELIGKLTGHVVALSLHV 298
Query: 224 ETVCKLIRSALHPSDIDEELVVLNKISTEPPK 319
C++++ A SD+D+ + + N++ E K
Sbjct: 299 YG-CRVMQKAFEVSDMDQRIEMANEVEKEKEK 329
>02_01_0278 -
1851338-1851412,1851579-1851819,1851946-1852047,
1852291-1852364,1852455-1852592,1852848-1853003,
1853364-1853513,1853808-1853867,1853946-1854073,
1854209-1854617,1855571-1855628,1856435-1856493,
1857478-1857606,1857765-1857774,1858134-1858183,
1858633-1858854
Length = 686
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 161 DHVALPSFSSIYEHIESSTHIETVCKLIRSALHPSDIDEELVVLNKISTEPPKCNFCD 334
+ VA+ + ++EH+ + I K++R HP ++VV+ I P + F D
Sbjct: 217 ERVAIKKINDVFEHVSDAIRILREIKVLRLLRHP-----DIVVIKHIMLPPTRREFRD 269
>01_05_0782 -
25148733-25149166,25149252-25149415,25149636-25149664,
25150049-25150109,25150264-25150475,25150587-25150742,
25150837-25150986,25151486-25151545,25151653-25151780,
25152399-25152807,25153087-25153106,25153916-25154048
Length = 651
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 161 DHVALPSFSSIYEHIESSTHIETVCKLIRSALHPSDIDEELVVL 292
+ VA+ I+EHI + I KL+R HP ++ + ++L
Sbjct: 92 EKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIML 135
>03_06_0340 +
33252677-33252864,33253086-33254442,33254565-33254667,
33256081-33256171,33257208-33257300,33258316-33258471,
33258583-33258655
Length = 686
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 254 LHPSDIDEELVVLNKISTEPPKCNFCDQTFQKIGDAFRHVLSSVEHQTAVAEA 412
+HPS+ D + ++ N S E K + ++ KI HVL +QT A
Sbjct: 407 IHPSEDDYDAILKNTASIEVYKSDLVEEKLVKINRLQDHVLFVGHNQTLCLRA 459
>05_07_0262 +
28769335-28769391,28769732-28769855,28770175-28770266,
28770673-28771078,28772057-28772184,28772273-28772332,
28772814-28772963,28772999-28773061,28773062-28773217,
28773361-28773572,28773698-28773796,28774343-28774512,
28774592-28775040
Length = 721
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 167 VALPSFSSIYEHIESSTHIETVCKLIRSALHPSDIDEELVVL 292
VA+ +I+EH+ + I KL+R HP ++ + ++L
Sbjct: 133 VAIKKVHNIFEHVSDAARILREIKLLRLLRHPDIVEIKHIML 174
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 317 KCNFCDQTFQKIGDAFRHVLSSVEHQTAVAEAMLSDNRGDI 439
+C C++TF++ F H+ S ++Q EA L G +
Sbjct: 362 ECPVCNKTFEEQSRYFGHIGSHAKYQGLTPEAFLQTFSGKV 402
>04_04_1100 + 30894575-30895012,30896082-30897044
Length = 466
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 33 IYARKSISVIRHRGSWILCIGIIAAHRNTLRRSG 134
++AR + S RHR S C+G++ R LRR G
Sbjct: 272 LHARAAASPPRHRRS--CCMGVVVDGRTRLRRDG 303
>01_06_0539 + 30077249-30078739
Length = 496
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/81 (24%), Positives = 37/81 (45%)
Frame = -2
Query: 299 FYSELRVLRRCQTDEERSGLTCIQSLCEWSFRCARI*MRKMATPRGRGK*CICSNSRTTQ 120
+Y L+ + ++RSGLT I S WS A + ++++ I ++ T+
Sbjct: 391 WYIHLQGEHQSDMFKKRSGLTYIWSYKNWSAVTATFHLYQISSANLNDLPVIRTSELLTR 450
Query: 119 SIPMGGNDSYTQYPTSSVPYY 57
I + G ++ +S PYY
Sbjct: 451 DIKLEGKFDALEWRSSVPPYY 471
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 194 YEHIESSTHIETVCKLIRSAL--HPSDIDEELVVLNKISTEPPK-CNFC 331
+ H+E+ H ET C + L HP + VV +++ P + C+ C
Sbjct: 52 FAHLEAGVHGETKCWSFQLELHRHPPTVVRLFVVEEEVAASPHRQCHLC 100
>08_01_0911 -
8976912-8977127,8977743-8977867,8977937-8978058,
8978283-8978422
Length = 200
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 75 FLGAVLRRCFFWRIWLNNTCRGP 7
FLG V R FW +W + CR P
Sbjct: 150 FLGGVECRSGFWVMWSVHVCRSP 172
>07_03_1004 +
23244479-23244648,23245104-23245276,23245535-23245638,
23245849-23246037,23246508-23248076
Length = 734
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +2
Query: 56 RNTAPRKLDIVYRNHCRPSE---YFASFGNYYICTICPDHVALPSFSSIYEHIESSTHIE 226
R P + ++R CR + A+ YY CPDH + +F Y+ T+ E
Sbjct: 128 RRRCPSRRRSLFRLRCRRGRRQLHLANSDYYYFFQSCPDHAFIINFPLDYKSNMIGTYPE 187
>01_07_0086 -
40992187-40992468,40992670-40992753,40992869-40993054,
40993076-40993243
Length = 239
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 203 IESSTHIETVCKLIRSALHPSDIDEELVVLNKISTEP 313
+ S H T L S +HP+ IDE +L+ ++ P
Sbjct: 32 LRSEGHRVTALDLAASGVHPARIDESRPLLDTVAVAP 68
>01_06_1527 - 38006174-38006815,38006920-38007420
Length = 380
Score = 27.1 bits (57), Expect = 8.7
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = +2
Query: 86 VYRNHCRPSEYFASFGNYYICTICPDHVALPSFSSIYEHIESSTHIETVCKLIRSALHPS 265
++R HCRPS Y PD LP+F ++ ++S T R HP+
Sbjct: 277 LFRRHCRPSCY-------------PDEHYLPTFVAMLHGADNSNRTVTYVDWSRGGAHPA 323
Query: 266 -----DIDEELVVLNKISTEP 313
D+ EL++ + S P
Sbjct: 324 TYTAGDVTPELILSIRRSEVP 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,078,656
Number of Sequences: 37544
Number of extensions: 330981
Number of successful extensions: 774
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -