Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B04
(507 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical ... 31 0.48
Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical pr... 28 3.4
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 28 3.4
AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor med... 28 3.4
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 28 3.4
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 28 4.5
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 28 4.5
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p... 28 4.5
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 28 4.5
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p... 28 4.5
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z68108-6|CAF31486.1| 537|Caenorhabditis elegans Hypothetical pr... 28 4.5
AY390551-1|AAQ94963.1| 926|Caenorhabditis elegans SMA-9 class I... 28 4.5
AY390550-1|AAQ94962.1| 537|Caenorhabditis elegans SMA-9 class I... 28 4.5
AY390549-1|AAQ94961.1| 411|Caenorhabditis elegans SMA-9 class I... 28 4.5
AY390548-1|AAQ94960.1| 352|Caenorhabditis elegans SMA-9 class I... 28 4.5
AY390547-1|AAQ94959.1| 337|Caenorhabditis elegans SMA-9 class I... 28 4.5
AY390545-1|AAQ94957.1| 792|Caenorhabditis elegans SMA-9 class I... 28 4.5
AY390542-1|AAQ94954.1| 468|Caenorhabditis elegans SMA-9 class I... 28 4.5
AY390541-1|AAQ94953.1| 521|Caenorhabditis elegans SMA-9 class I... 28 4.5
AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class I... 28 4.5
Z93397-5|CAD89745.1| 375|Caenorhabditis elegans Hypothetical pr... 27 5.9
U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center... 27 5.9
U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center... 27 5.9
U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center... 27 5.9
U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center... 27 5.9
AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical ... 27 5.9
AC103567-8|AAL35729.1| 305|Caenorhabditis elegans Hypothetical ... 27 5.9
AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical ... 27 5.9
>AF003137-3|AAB93640.1| 625|Caenorhabditis elegans Hypothetical
protein C27A12.2 protein.
Length = 625
Score = 31.1 bits (67), Expect = 0.48
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +2
Query: 140 YICTICPDHVALPSFSSIYEHIESST----HIETVCKLIRSALHPSDIDEELVVLNKIST 307
Y C C H+ PS I EHI T ++ ++C + S H + K
Sbjct: 71 YHCVQCNKHIKYPS--KITEHIRKHTGEKPNVCSICNISFSQAHTLKTHMQQHAHEK--- 125
Query: 308 EPPKCNFCDQTFQKIGDAFRHVLSSVEH 391
P KC+FC F + + H + H
Sbjct: 126 -PYKCSFCTAEFLNVYEKNEHEEQHMHH 152
>Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical
protein K02B12.9 protein.
Length = 118
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 104 GNDSYTQYPTSSVPYYGDAF 45
GND Y+ Y S PYYG ++
Sbjct: 79 GNDYYSSYQPSHQPYYGGSY 98
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 233 CKLIRSALHPSDIDEELVVLNKISTEP 313
C+L R + DID+ LV+ K ST P
Sbjct: 3 CQLCRPTVTDEDIDKTLVIFRKKSTNP 29
>AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform e protein.
Length = 613
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 233 CKLIRSALHPSDIDEELVVLNKISTEP 313
C+L R + DID+ LV+ K ST P
Sbjct: 3 CQLCRPTVTDEDIDKTLVIFRKKSTNP 29
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 233 CKLIRSALHPSDIDEELVVLNKISTEP 313
C+L R + DID+ LV+ K ST P
Sbjct: 3 CQLCRPTVTDEDIDKTLVIFRKKSTNP 29
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 1522 ETLKCDQCDRTFRKISDLTLH 1542
>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
protein T05A10.1f protein.
Length = 2048
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 1590 ETLKCDQCDRTFRKISDLTLH 1610
>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
protein T05A10.1e protein.
Length = 2101
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 1590 ETLKCDQCDRTFRKISDLTLH 1610
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 1590 ETLKCDQCDRTFRKISDLTLH 1610
>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
protein T05A10.1g protein.
Length = 1888
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 1590 ETLKCDQCDRTFRKISDLTLH 1610
>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical protein
T05A10.1i protein.
Length = 1927
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 1590 ETLKCDQCDRTFRKISDLTLH 1610
>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical protein
T05A10.1c protein.
Length = 1692
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 1148 ETLKCDQCDRTFRKISDLTLH 1168
>Z68108-6|CAF31486.1| 537|Caenorhabditis elegans Hypothetical
protein T05A10.1h protein.
Length = 537
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 238 ETLKCDQCDRTFRKISDLTLH 258
>AY390551-1|AAQ94963.1| 926|Caenorhabditis elegans SMA-9 class IIc
protein.
Length = 926
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 589 ETLKCDQCDRTFRKISDLTLH 609
>AY390550-1|AAQ94962.1| 537|Caenorhabditis elegans SMA-9 class IIb
protein.
Length = 537
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 238 ETLKCDQCDRTFRKISDLTLH 258
>AY390549-1|AAQ94961.1| 411|Caenorhabditis elegans SMA-9 class IIb
protein.
Length = 411
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 112 ETLKCDQCDRTFRKISDLTLH 132
>AY390548-1|AAQ94960.1| 352|Caenorhabditis elegans SMA-9 class IIb
protein.
Length = 352
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 53 ETLKCDQCDRTFRKISDLTLH 73
>AY390547-1|AAQ94959.1| 337|Caenorhabditis elegans SMA-9 class IIb
protein.
Length = 337
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 38 ETLKCDQCDRTFRKISDLTLH 58
>AY390545-1|AAQ94957.1| 792|Caenorhabditis elegans SMA-9 class IIb
protein.
Length = 792
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 493 ETLKCDQCDRTFRKISDLTLH 513
>AY390542-1|AAQ94954.1| 468|Caenorhabditis elegans SMA-9 class IIa
protein.
Length = 468
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 170 ETLKCDQCDRTFRKISDLTLH 190
>AY390541-1|AAQ94953.1| 521|Caenorhabditis elegans SMA-9 class Ib
protein.
Length = 521
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 10 ETLKCDQCDRTFRKISDLTLH 30
>AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 591
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 EPPKCNFCDQTFQKIGDAFRH 370
E KC+ CD+TF+KI D H
Sbjct: 47 ETLKCDQCDRTFRKISDLTLH 67
>Z93397-5|CAD89745.1| 375|Caenorhabditis elegans Hypothetical
protein ZC482.8 protein.
Length = 375
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 107 PSEYFASFGNYYICTICPDHVALPSFSSIYEHIESSTHIETVCK 238
P +Y A+ YY DH+ + F ++++H E T + V K
Sbjct: 5 PKKYLATTTPYYEDETGDDHIYMFFFENLHKHFELVTVLTDVTK 48
>U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center
kinase family protein1, isoform d protein.
Length = 638
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 107 GGNDSYTQYPTSSVPYYGDAFSGVYG*TIPAGDP 6
GGN + +QY TSS+P A SG TI G P
Sbjct: 383 GGNSASSQYATSSLPQSHTASSG-GATTITLGSP 415
>U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center
kinase family protein1, isoform b protein.
Length = 651
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 107 GGNDSYTQYPTSSVPYYGDAFSGVYG*TIPAGDP 6
GGN + +QY TSS+P A SG TI G P
Sbjct: 396 GGNSASSQYATSSLPQSHTASSG-GATTITLGSP 428
>U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center
kinase family protein1, isoform c protein.
Length = 650
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 107 GGNDSYTQYPTSSVPYYGDAFSGVYG*TIPAGDP 6
GGN + +QY TSS+P A SG TI G P
Sbjct: 395 GGNSASSQYATSSLPQSHTASSG-GATTITLGSP 427
>U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center
kinase family protein1, isoform a protein.
Length = 653
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 107 GGNDSYTQYPTSSVPYYGDAFSGVYG*TIPAGDP 6
GGN + +QY TSS+P A SG TI G P
Sbjct: 398 GGNSASSQYATSSLPQSHTASSG-GATTITLGSP 430
>AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical
protein Y5F2A.4 protein.
Length = 454
Score = 27.5 bits (58), Expect = 5.9
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +2
Query: 293 NKISTEPPKCNFCDQTFQKIGDAFRHVLS 379
++ +++P KC+ CD+ F ++ RH ++
Sbjct: 36 DRSASDPLKCSMCDKVFPRLSHLQRHQMT 64
>AC103567-8|AAL35729.1| 305|Caenorhabditis elegans Hypothetical
protein Y51F10.2 protein.
Length = 305
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 206 ESSTHIETVCKLIRSALHPSDIDEELVVLNK 298
E T+I T C I HP+++ E+ V+LN+
Sbjct: 121 EKDTNICTTCSPIIKDAHPTELIEQGVILNQ 151
>AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical
protein Y54E10BR.8 protein.
Length = 419
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 311 PPKCNFCDQTFQKIGDAFRHVLSSVEHQTAVAEAMLSDNRGD 436
P CN C ++F K RH+ + + A +AML RGD
Sbjct: 333 PYICNVCGKSFTKNSHVIRHLKNIHNRELAQQDAML---RGD 371
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,884,355
Number of Sequences: 27780
Number of extensions: 283880
Number of successful extensions: 906
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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