Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B02
(321 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 63 1e-11
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 27 0.70
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 26 1.6
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 25 2.8
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 2.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 3.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 3.8
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 24 5.0
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 24 5.0
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 23 8.7
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom... 23 8.7
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 62.9 bits (146), Expect = 1e-11
Identities = 34/78 (43%), Positives = 47/78 (60%)
Frame = +1
Query: 88 MSILAYNGGAVVAMKGQDCVAIAHGQTLVVSRPKLSPPTFLKCSRWDPTLYVGLPGLATD 267
MSI+ YNGG+ VAM G++CVAIA L V L+ F K Y+GL GLATD
Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLT-NNFPKVFAMGDKTYLGLTGLATD 59
Query: 268 TQTVLQRLKRRMNLYELK 321
QT+ + + ++NLY+ +
Sbjct: 60 VQTLYELFRYKVNLYKFR 77
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 0.70
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 178 SRPKLSPPTFLKCSRWDPTLYVGLPGLATDTQTVLQRLKRRMNLYE 315
+RP L P+ L+ R+D +Y+G+ ++L+ L + L E
Sbjct: 802 NRPDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDE 847
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 1.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 178 SRPKLSPPTFLKCSRWDPTLYVGLPGLATDTQTV 279
+RP + P ++ R D LYVG P Q V
Sbjct: 690 NRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIV 723
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 2.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1
Query: 196 PPTFLKCSRWDP 231
PP+F +C WDP
Sbjct: 264 PPSFFQCCGWDP 275
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 2.8
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = -3
Query: 193 TVWAWIPQAF---VRER*PHSLGPSSQQLHLHCTLVSTF--YSLD*IF 65
T W WI F V S+G S LHLH +V T +SL+ I+
Sbjct: 248 TAWTWIKPCFFNFVILLKRISIGDSQLFLHLHSRIVQTLCCFSLNFIY 295
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 3.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 180 GYHKRLSVSDSHTVLALHR 124
G+ KR+ +SD HT +HR
Sbjct: 784 GFCKRIGISDIHTYDEIHR 802
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.6 bits (51), Expect = 3.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 114 CSCCDEGPRLCGYRSRTNACG 176
CS CD L +RS+ ACG
Sbjct: 2556 CSLCDSRFSLMEWRSQCRACG 2576
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 24.2 bits (50), Expect = 5.0
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 96 TSVQWRCSCCDEGPRLCGYRSRTNACGIQAQTVSTNFPKVFQMGPNIICWAPWSCN 263
T + WR + DEGP L GY + +Q + + N V + NI + W+ N
Sbjct: 165 TLIIWRLT--DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIF-DWTLN 217
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 24.2 bits (50), Expect = 5.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 133 PSSQQLHLHCTLVSTFYS 80
PSSQ L CT +ST+ S
Sbjct: 241 PSSQLLQAQCTALSTYIS 258
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 23.4 bits (48), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 112 GAVVAMKGQDCVAIAHGQTLVVSRP 186
GAV + +AIAHGQ L + +P
Sbjct: 57 GAVALDQRTGFLAIAHGQVLDIYKP 81
>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 23.4 bits (48), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 152 SLTDKRLWYPGPNCLHQLS*SVPDGTQ 232
SL ++R YP CLH S S+ +Q
Sbjct: 223 SLAEERKHYPPKICLHSYSGSIEQISQ 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,458,951
Number of Sequences: 5004
Number of extensions: 28675
Number of successful extensions: 73
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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