Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B02
(321 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0903 - 25816395-25816493,25816695-25816779,25817390-258174... 66 6e-12
02_01_0614 - 4599035-4599083,4599209-4599303,4599410-4599494,460... 63 4e-11
04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990... 30 0.47
09_03_0065 + 12013715-12013720,12013899-12014612 27 2.5
11_01_0198 - 1556215-1556298,1556412-1556580,1556666-1556921,155... 27 3.3
05_07_0326 + 29274287-29274428,29274577-29275379 27 3.3
06_03_0023 + 15558890-15559117,15559229-15560134 27 4.3
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 27 4.3
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 26 5.7
08_01_0019 - 146078-146761 26 5.7
02_05_1239 + 35174901-35174903,35175001-35175102,35175180-351752... 26 5.7
>06_03_0903 -
25816395-25816493,25816695-25816779,25817390-25817479,
25818566-25818673,25818771-25818952,25819032-25819216,
25820812-25820971
Length = 302
Score = 66.1 bits (154), Expect = 6e-12
Identities = 37/78 (47%), Positives = 48/78 (61%)
Frame = +1
Query: 88 MSILAYNGGAVVAMKGQDCVAIAHGQTLVVSRPKLSPPTFLKCSRWDPTLYVGLPGLATD 267
MSI YNG AVVAM G++C AIA + L V ++ F + + LY+GL GLATD
Sbjct: 114 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATD-FQRVFKIHDKLYIGLSGLATD 172
Query: 268 TQTVLQRLKRRMNLYELK 321
QT+ QRL R LY+L+
Sbjct: 173 AQTLYQRLVFRHKLYQLR 190
>02_01_0614 -
4599035-4599083,4599209-4599303,4599410-4599494,
4600107-4600196,4600772-4600879,4600983-4601197
Length = 213
Score = 63.3 bits (147), Expect = 4e-11
Identities = 35/78 (44%), Positives = 47/78 (60%)
Frame = +1
Query: 88 MSILAYNGGAVVAMKGQDCVAIAHGQTLVVSRPKLSPPTFLKCSRWDPTLYVGLPGLATD 267
+ I YNG AVVAM G++C AIA + L V ++ F + + LY+GL GLATD
Sbjct: 10 LQIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATD-FQRVFKIHDKLYIGLSGLATD 68
Query: 268 TQTVLQRLKRRMNLYELK 321
QT+ QRL R LY+L+
Sbjct: 69 AQTLYQRLVFRHKLYQLR 86
>04_04_1163 -
31398565-31398654,31398729-31398812,31398893-31399037,
31399118-31399239,31399338-31399376,31399491-31399601,
31399682-31399804,31399946-31400032,31400136-31400207,
31400349-31400621,31400704-31400895,31400988-31401171,
31401339-31401480,31401578-31401821,31401959-31402603,
31403024-31403293
Length = 940
Score = 29.9 bits (64), Expect = 0.47
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 178 SRPKLSPPTFLKCSRWDPTLYVGLPGLATDTQTVLQRLKRRMNLYE 315
+RP L L+ R+D LYVG+ A+ + +L+ R+ L+E
Sbjct: 803 NRPDLLDSALLRPGRFDKLLYVGVNSDASYRERILKAQTRKYKLHE 848
>09_03_0065 + 12013715-12013720,12013899-12014612
Length = 239
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 96 TSVQWRCSCCDEGPRLCGYRS 158
+S +WRC CC E YRS
Sbjct: 114 SSARWRCDCCGERSDYWVYRS 134
>11_01_0198 -
1556215-1556298,1556412-1556580,1556666-1556921,
1557000-1557114,1557191-1557441,1557565-1557892,
1558197-1558358,1558846-1558985,1559325-1559436,
1560028-1560200,1560411-1560506,1560687-1560930
Length = 709
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 7 GLFGFLNINCNSIRKNILQ*IFNQDYKMSILAYNGGAV 120
G+F +LN N + R+ IL+ +FN ++ Y+ +
Sbjct: 3 GIFAYLNYNVSRERRYILEVLFNGLRRLEYRGYDSSGI 40
>05_07_0326 + 29274287-29274428,29274577-29275379
Length = 314
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 187 KLSPPTFLKCSRWDPTLYVGLPGLATDTQTVLQRLKRR 300
K P T + + +PT LPG D +++ +++KRR
Sbjct: 202 KHKPATTTERKQAEPTTAAPLPGHVVDRESLAEKVKRR 239
>06_03_0023 + 15558890-15559117,15559229-15560134
Length = 377
Score = 26.6 bits (56), Expect = 4.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 152 IATQSWPFIATTAPPLYASID 90
++T +WPF+A A L S+D
Sbjct: 4 LSTAAWPFLAAVAAALLCSVD 24
>03_02_1023 +
13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 223 WDPTLYVGLPGLATDTQTVLQRLKRRMNLYELK 321
W+P Y+ L +AT ++++ R+K + + E+K
Sbjct: 787 WEPDPYLELLEVATRLKSIMHRIKHQNSANEIK 819
>09_02_0224 -
5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 275 VCVSVARPGSPTYNVGSHLEHFRKVGGDSLGLDTTS 168
+C+ + + GS +++V + HFR++ S G TTS
Sbjct: 868 ICLRLGKAGSMSWDVRINDPHFRELWELSTGSTTTS 903
>08_01_0019 - 146078-146761
Length = 227
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 189 TVSTNFPKVFQMGPNIICWAPW 254
TV T+ P V+Q P++ W+P+
Sbjct: 117 TVPTSLPPVYQGHPDLTVWSPF 138
>02_05_1239 +
35174901-35174903,35175001-35175102,35175180-35175248,
35176466-35176561,35176724-35176813
Length = 119
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 222 MGPNIICWAPWSCN*HTNRASEIKTQN 302
MGPNI+CW + H +E + N
Sbjct: 92 MGPNILCWLCPTATGHLKDGTEFQITN 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,585,910
Number of Sequences: 37544
Number of extensions: 196002
Number of successful extensions: 528
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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