Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_B01
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    31   0.079
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    30   0.18 
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    27   1.7  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   3.0  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    26   3.9  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    25   9.0  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
 Frame = +2

Query: 164 TRKSFATHI-----LYFLTELSPLSMT--SFYVKKHAKSDTIKRDTRXXXXXXXXXXXWK 322
           T+ SF+THI     L+   E+SP+  T   ++  K +   T+K D              K
Sbjct: 744 TKDSFSTHISVSSLLHSDNEISPIDSTRKDYFTSKDSNLQTLKEDASST----------K 793

Query: 323 VIQDSGLVDIDNLEEANNVNEKFGNIEQ 406
             +DSG  D D L   N+V++     EQ
Sbjct: 794 QAKDSGTNDFDKLISGNDVSKNNSGEEQ 821


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 71  VVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSPLSMTSFYVKKH 250
           V+K+    YD +GN +    +EIP  +K +  R  +    + F  E++ + + S   K +
Sbjct: 142 VLKSKTLAYDGRGNYVVHQPSEIPTAIKALGDRPLYVEKFVPFSMEIAVMVVRSLDGKVY 201

Query: 251 A--KSDTIKRD 277
           A   ++TI++D
Sbjct: 202 AYPTTETIQKD 212


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 182 THILYFLTELSPLSMTSFYVKKHAKSDTI 268
           + ILYFL  LSP+S +S  V  H   ++I
Sbjct: 94  SQILYFLYLLSPISQSSRDVSSHLLDESI 122


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -3

Query: 514 YVIVFRPFPASSTFFISNEFLF--VYRINLIFVYIVNLLFN 398
           Y + FRP   SS   I    L+   YR N I++ ++  + N
Sbjct: 154 YTLYFRPMVVSSFAHIFGHLLYCMAYRANWIYLILIGRMLN 194


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +2

Query: 68   PVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTEL-----SPLSMTS 232
            P++  +  ++ PK  +L  NLAEI +   H  +  +F   + Y   E+     S L  TS
Sbjct: 2081 PLLLRNNLIHTPKATELWENLAEIDN---HTASGAAFQRLLYYLALEIPNEDSSVLGWTS 2137

Query: 233  FYVKKH 250
              V KH
Sbjct: 2138 LKVSKH 2143


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 63  RYQSSKLITKSMTRKVINYLQI*QKYLIFSNIFLRGN 173
           R +++++I K MTR+ ++Y     KY++  N  LR N
Sbjct: 3   RAENARIIQKPMTRRTVDYGSGLSKYIV--NRHLRSN 37


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 41  WKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHI 190
           W  +  I +    ADY   DP   +L  N    P F+ H+  R+S   HI
Sbjct: 544 WIDRNLIRLCQHFADYRKEDPSSFRLLPNFTLYPQFIFHL--RRSPFLHI 591


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +2

Query: 347 DIDNLEEANNVN---EKFGNIEQKVNDINKYQVNTINK 451
           DID  + ++N +   E FGN   K+N +N + V+T+++
Sbjct: 34  DIDWNQASSNYSARQENFGNNSSKINSVNDH-VSTLSR 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,904
Number of Sequences: 5004
Number of extensions: 35248
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)