Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_B01
(522 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 39 0.002
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 36 0.026
07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187... 29 1.7
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 29 1.7
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 27 6.9
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864... 27 6.9
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416... 27 6.9
11_04_0096 + 13435988-13436803,13436880-13437053,13437673-134378... 27 9.1
06_03_1471 + 30374988-30375959 27 9.1
01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405... 27 9.1
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 5 EDFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEI 139
+ +V +YNSL WK + + IPV+ V+D +G ++ S L I
Sbjct: 459 KSLVVLVYNSLGWKREDVLRIPVISDSIVVHDSEGREVESQLLPI 503
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 35.5 bits (78), Expect = 0.026
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 5 EDFIVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEI 139
+ ++ +YN L W+ F+ +PV A+ V G L S L E+
Sbjct: 492 KSLVIVVYNPLGWERSDFVRVPVNDANLIVKTSDGTSLESQLVEV 536
>07_01_0251 +
1874148-1874311,1874367-1874429,1874484-1874709,
1874830-1875081,1875158-1875267,1875720-1875815,
1875898-1875985,1876246-1876475,1876745-1876929,
1877136-1877335,1877592-1877924,1878058-1878159,
1878869-1879166,1879626-1879774,1879859-1880143,
1880531-1880728
Length = 992
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 514 YVIVFRPFPASSTFFISNEFLFVYRINLIFVYIVNLLFNI 395
+V+VF FP +F I E + R+N F + N++F I
Sbjct: 674 FVLVFSMFPQCDSFRILREDSWADRVNSFFTAMWNVVFEI 713
>03_06_0221 +
32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 14 IVTIYNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTR 169
++ ++ +L + F E P ++ E Y +G K ++IPD+LKH+ TR
Sbjct: 262 LLKMFTALGMYSESF-EKPFLECTSEFYATEGVKYLQQ-SDIPDYLKHVETR 311
>04_04_0468 -
25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 377 HYSLLPNYLCLLNQNLESLSNIHWYY 300
H L+P L L+SLSN+H+YY
Sbjct: 624 HEMLIPAVLKPSGLKLDSLSNLHFYY 649
>02_05_0161 +
26384079-26384086,26386173-26386226,26386376-26386448,
26386775-26386822,26386906-26386953,26387990-26388061,
26388156-26388311,26388428-26388531,26388628-26388724
Length = 219
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 383 EKFGNIEQKVNDINKYQVNTINK 451
E F N++Q +N+I++Y + +NK
Sbjct: 110 ESFNNVKQWLNEIDRYASDNVNK 132
>01_01_0565 -
4159946-4160042,4160140-4160243,4160378-4160533,
4160629-4160700,4161796-4161843,4161923-4161970,
4162295-4162367,4163188-4163201
Length = 203
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 383 EKFGNIEQKVNDINKYQVNTINK 451
E F N++Q +N+I++Y + +NK
Sbjct: 94 ESFNNVKQWLNEIDRYASDNVNK 116
>11_04_0096 +
13435988-13436803,13436880-13437053,13437673-13437834,
13438548-13438690,13439059-13439134,13439231-13439403,
13439482-13439563,13439949-13440026,13440369-13440461,
13441026-13441187,13441225-13441530,13442265-13442369,
13443097-13443243
Length = 838
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 26 YNSLAWKVKKFIEIPVVKADYEVYDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFL 202
+++ W + I + DY DP L SN + P F+ ++ R F IL L
Sbjct: 602 FDATRWLDRSLIRLCSRFGDYRKDDPSSFSLHSNFSLFPQFMFNL-RRSQFVQEILALL 659
>06_03_1471 + 30374988-30375959
Length = 323
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 50 KKFIEIPVVKADYEV-YDPKGNKLPSNLAEIPDFLKHIPTRKSFATHILYFLTELSP 217
KK+ ++ Y Y P G + SNL PD + T SF T +++T SP
Sbjct: 188 KKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDAT-VSFKTAFWFWMTPQSP 243
>01_05_0340 -
21139885-21139978,21140169-21140272,21140379-21140534,
21140622-21140693,21140782-21140829,21140923-21140970,
21141807-21141879,21142333-21142346
Length = 202
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 383 EKFGNIEQKVNDINKYQVNTINK 451
E F N++Q +N+I++Y +NK
Sbjct: 94 ESFNNVKQWLNEIDRYASENVNK 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,350,676
Number of Sequences: 37544
Number of extensions: 165271
Number of successful extensions: 353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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