Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A24
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0086 + 15916555-15916905,15917236-15917262                       31   0.30 
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306...    29   1.2  
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732...    28   2.8  
02_05_0263 - 27257150-27259213                                         27   4.9  
02_05_1004 + 33444248-33444847                                         27   6.4  
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576...    27   8.5  

>01_04_0086 + 15916555-15916905,15917236-15917262
          Length = 125

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 305 SGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYNDYKYA 427
           S R   GENL+W S           +A++SW  E +DY YA
Sbjct: 72  SNRNNLGENLFWGSAGGDW---TAASAVQSWVGEKSDYDYA 109


>02_01_0418 -
           3059575-3061279,3061915-3061973,3064270-3064353,
           3064395-3064559
          Length = 670

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 75  VLDTSIVNLY*TCHANKSKISSTDTIIGDNYWLRVRYQDTLLQ 203
           + + S  ++  T HA KS  + T   IG+N+W  V  QD  ++
Sbjct: 356 ITENSFSDIAKTLHAFKSSRNLTTLFIGENFWGEVIPQDETIE 398


>08_02_0749 -
           20769224-20770535,20770649-20771510,20771622-20773263,
           20773357-20773701,20773858-20773952,20774218-20774344,
           20774430-20774435
          Length = 1462

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 275 NFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 397
           N  NPDK++G  +    E  +   T DS    +++ AME+W
Sbjct: 406 NASNPDKSVGGLQDAVVETKHSNGTRDSRLHWDLNVAMEAW 446


>02_05_0263 - 27257150-27259213
          Length = 687

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 72  YVLDTSIVNLY*TCHANKSKISS 140
           Y+L+T IVNLY  C A +S +++
Sbjct: 168 YILETCIVNLYTRCGAYQSAVAT 190


>02_05_1004 + 33444248-33444847
          Length = 199

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/70 (22%), Positives = 26/70 (37%)
 Frame = +2

Query: 218 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 397
           + W   L         Q +       +   G+F  GEN++W     +       +A++ W
Sbjct: 79  LAWSPRLESYARWWAAQRRGDCALRHSFPEGQFALGENIFWGGAGGA---WRPGDAVKDW 135

Query: 398 FNEYNDYKYA 427
             E  DY YA
Sbjct: 136 AAEGVDYSYA 145


>12_01_0676 +
           5765154-5765241,5765329-5765453,5765533-5765604,
           5765728-5765802,5765880-5765905,5766709-5766870,
           5766963-5767037,5767133-5767204,5767289-5767363,
           5767461-5767529,5767839-5767910,5768030-5768161,
           5768430-5768920,5769315-5769476,5769570-5769709,
           5769818-5770037,5770398-5770633,5771560-5772051
          Length = 927

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
 Frame = +2

Query: 68  VVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQVSGHPAATEMKYMVWDEELXXX 247
           ++C G+  +  L  +  + ++D   GH+   ++   G +          +  W+ E    
Sbjct: 60  IICTGNRVTSMLKTVKFRTVRDAFRGHSVLIRIAVPGLILQQELEWPPSFNHWNLEQAPK 119

Query: 248 XXXXXXQNKNFHNPDKTLGSGRFQTG--ENLYWYSTTDS--TYKLNVDNAMESWFNEYND 415
                 +     N +K  GS     G    LYW+   D+  T  L + NA     +    
Sbjct: 120 LNSCRLRLYRSLNSNKFTGSIPPSLGGLSKLYWFDLADNQLTGGLPISNATSPGLDNLTS 179

Query: 416 YKY 424
            K+
Sbjct: 180 TKH 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,229,442
Number of Sequences: 37544
Number of extensions: 215420
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)