Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A23
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.89 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +3

Query: 327 ELDSWSSTKNMPEGARTQMK-PDSSKRTPEKSGPIHPK--HNLQTNVDLIKHDESKHHEN 497
           E D     ++  E  ++Q + P+SS    E+   IH +   +L T+ D+    + KH  N
Sbjct: 84  ETDDKDDDESDNENIKSQKEFPNSSSSDDERPNSIHQRASFSLNTDGDIAGLRKKKHKVN 143

Query: 498 EIIKKT 515
            ++ ++
Sbjct: 144 PLLMQS 149


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 1/106 (0%)
 Frame = +3

Query: 132 DNLHTDGDFYDRPKTQRQHGEIPNQIRPKDNLRE-ESDFDHPRNQKWHPGDRRSPIKPKD 308
           DN + +    D     +Q+G   N  R  DN +      D+ +N      ++++  +   
Sbjct: 438 DNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNG 497

Query: 309 NLHTEGELDSWSSTKNMPEGARTQMKPDSSKRTPEKSGPIHPKHNL 446
           N   + + +      N   G R     ++          +H    L
Sbjct: 498 NKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQVHHSSKL 543


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 153 DFYDRPKTQRQHGEIPNQ 206
           D++ RP  +R H  +P +
Sbjct: 99  DYFSRPFEKRLHSRLPGR 116


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 13/52 (25%), Positives = 21/52 (40%)
 Frame = +3

Query: 390  DSSKRTPEKSGPIHPKHNLQTNVDLIKHDESKHHENEIIKKTIDSKVFSSHD 545
            D+ K T     P    +     VD+  + E +  +  I   + DSKV +  D
Sbjct: 1097 DTEKLTDRLPYPWTMDNERYVKVDMYMNLEGEQKDPVIFSTSFDSKVMTRPD 1148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,845
Number of Sequences: 438
Number of extensions: 3312
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)