Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A21
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 28 0.44
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 27 0.78
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 1.0
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 27 1.4
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 1.8
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 26 1.8
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 26 2.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 4.1
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 24 7.2
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 24 7.2
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.6
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 24 9.6
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 24 9.6
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 24 9.6
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 28.3 bits (60), Expect = 0.44
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 45 PVNSNILYESEGRKTIYRRTKKIPSRQRDE 134
PVN N ESE + I + TKK+ ++ +E
Sbjct: 147 PVNYNSSSESESEEQISKATKKVKQKEEEE 176
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 27.5 bits (58), Expect = 0.78
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 48 VNSNILYESEGRKTIYRRTKKIPSRQRDEKEKY 146
VN NI+Y+ + RK IY T K P +EKY
Sbjct: 438 VNENIIYKEKKRKWIY-FTNKSPEMVSYLREKY 469
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 1.0
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 118 ADKEMRKRSMTLTGSATPLSRVWSARAVISTPLTNS*IRLARNSTTGAMARSIFDVLI 291
A+ ++ ++TLT + + R + S T+S +++A +STT RS VL+
Sbjct: 58 ANANIQLLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLV 115
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 26.6 bits (56), Expect = 1.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 380 SSLSEKMQVLVLGDSPSIDTDPPGSRRPPAISTSN 276
S+L + +VL L P P G R PA++TSN
Sbjct: 85 SALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 72 SEGRKTIYRRTKKIPSRQRDEKEKYDPNGFRDALVQGLE 188
S+G+ +I K+ SR DE+ Y GFR + + L+
Sbjct: 854 SKGKLSIDHFLNKVQSRWHDEEHHYYKTGFRKRVYKYLK 892
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 26.2 bits (55), Expect = 1.8
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 360 ASIGLGGFPVHRHRPTGQQETAGDKHIEYGPRHSAGSRVSSQPNL 226
+S+ L G +HR QQE +K I G S ++V S PNL
Sbjct: 125 SSLQLQGGDMHRQVYRWQQEVDQNKQIRRGRSRSFSAKV-SDPNL 168
>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 2.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = +3
Query: 267 EVHIRCAYRRRSPAARWVGVD-----GRGIPQDQY-LHFLRQRRHG 386
EV CA + RS A RW G+ G+G+ +D + +RR G
Sbjct: 305 EVSTFCALQLRSEAPRWKGIPIIISAGKGLDRDYFEARITFKRREG 350
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 4.1
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +1
Query: 142 SMTLTGSATPLSRVWSARAVISTPLTNS*IRLARNSTTGAMARS 273
S+ T SAT S S+ STPLT+S NSTT A + S
Sbjct: 231 SLNSTTSATATSSSISSTVSSSTPLTSS------NSTTAATSAS 268
Score = 24.2 bits (50), Expect = 7.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 142 SMTLTGSATPLSRVWSARAVISTPLTNS*IRLARNSTTGAMARS 273
S+ T SAT S S+ A ++ ++S + NSTT A A S
Sbjct: 199 SLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATS 242
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 64 CMSQKVEKPYIVEQKKFQADKEMRKRS-MTLTGSATPLSR 180
CM + + PY++ + K ++ K+S L TPL R
Sbjct: 527 CMLRDLISPYLLRRMKLDVAADLPKKSEQVLFCKLTPLQR 566
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 114 PSRQRDEKEKYDPNGFRDA 170
PS+Q+ KE NGF DA
Sbjct: 31 PSKQKKSKESNTGNGFLDA 49
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 23.8 bits (49), Expect = 9.6
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +3
Query: 126 RDEKEKYDPNG-FRDA---LVQGLERAGGDLDAAYKFLDSAGSK 245
++ +E D NG F DA +QG E G L+ + FL+ A +K
Sbjct: 215 KEIEEMKDSNGMFCDADHVPLQGQELCNGILEECFSFLEDAKTK 258
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +1
Query: 154 TGSATPLSRVWSARAVISTPLTNS*IRLARNSTTGAMARSI 276
TG A+P R+W A ++ + + + R T M++ +
Sbjct: 637 TGDASPKDRIWGTSACVTASVLQG-VSIVRVHDTKEMSKVV 676
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/43 (23%), Positives = 20/43 (46%)
Frame = +3
Query: 246 LDYRRYGEVHIRCAYRRRSPAARWVGVDGRGIPQDQYLHFLRQ 374
L+ R +H+ + AR + + R + + QY+H + Q
Sbjct: 648 LELLRNAGIHVWMLTGDKVETARCIAISSRLVSRGQYIHTINQ 690
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 23.8 bits (49), Expect = 9.6
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +1
Query: 142 SMTLTGSATPLSRVWSARAVISTPLTNS*IRLARNSTTGAMARSIFDVLIAGGLLLPGGS 321
S + G TP S+ S + P + I ++TTG + + I ++ G+ L
Sbjct: 173 SSSSNGHVTPGSKKGSRETLKKKPFVDENIPAELHTTTGDILKPITPEQLSQGIALAIAK 232
Query: 322 VSMD 333
S D
Sbjct: 233 TSTD 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,460
Number of Sequences: 5004
Number of extensions: 31537
Number of successful extensions: 115
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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