Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A21
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 37 0.006
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 29 1.7
07_03_1135 - 24213619-24213851,24214182-24214248,24214339-242144... 28 2.2
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076... 28 3.0
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 28 3.0
05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737 28 3.0
01_07_0280 + 42452993-42453337,42453778-42453981 28 3.0
09_06_0089 + 20781086-20782985,20783463-20783538,20783593-207836... 27 3.9
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129... 27 3.9
03_05_0600 + 26021863-26022469,26022562-26022992 27 5.2
03_01_0603 + 4445977-4446882 27 5.2
11_06_0128 - 20389375-20389781,20389988-20392787 27 6.9
06_03_1380 + 29747187-29747267,29747349-29747481,29747758-297477... 27 6.9
06_01_0892 - 6827510-6827590,6829348-6830412 27 6.9
02_01_0771 - 5748604-5749500 27 6.9
11_06_0516 + 24502645-24504507 26 9.1
11_01_0287 - 2137425-2137581,2137981-2138117,2138246-2138515,213... 26 9.1
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877... 26 9.1
07_03_0272 - 16143201-16144937,16145346-16145351,16145406-161455... 26 9.1
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684... 26 9.1
02_05_0682 + 30857876-30858106,30858187-30858399,30858867-308590... 26 9.1
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 36.7 bits (81), Expect = 0.006
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +3
Query: 105 KKIPSRQRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGEVHIRC 284
++I +R+R+ DP F DA+VQ GDL+ K ++S S L++ RYG+
Sbjct: 76 QRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVAKSIES--SDLNFSRYGDTFFEV 133
Query: 285 AY 290
+
Sbjct: 134 VF 135
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 28.7 bits (61), Expect = 1.7
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +3
Query: 132 EKEKYDPNGFRDALVQGLERAGGDLDAAYKFLDSAGSKLDYRRYGEV 272
EK+K DP GF D V A G ++ F S+G DY YGEV
Sbjct: 62 EKDKDDPEGFYDHKVAA---ADGRMEGI--FWASSGLGWDYVYYGEV 103
>07_03_1135 -
24213619-24213851,24214182-24214248,24214339-24214407,
24214862-24214978,24215078-24215149,24215544-24215638,
24216374-24216455,24216559-24216690,24217381-24217437,
24217764-24217805,24217878-24217976,24218056-24218076
Length = 361
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 159 FRDALVQGLERAGGDLDAAYKFLDSAGSKLD--YRRYGEVHIRCAYRR 296
FR+ L + + AG D+ + G K D + +GE +RC + +
Sbjct: 237 FREKLKEFTDNAGADVQSLSSLFSEVGKKADALIKYFGEDPVRCPFEQ 284
>09_06_0309 -
22206812-22206884,22207008-22207103,22207531-22207619,
22207738-22207820,22207932-22208048,22208132-22208319,
22208430-22208500,22208570-22208782,22210022-22210081,
22210186-22210476,22210590-22211894
Length = 861
Score = 27.9 bits (59), Expect = 3.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 323 CRWTGNPPRPILAFSPTT 376
C W +PP P +A +PTT
Sbjct: 416 CIWLASPPPPAIALAPTT 433
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 244 NSTTGAMARSIFDVLIAGGLLLPGGS 321
N A+ R++ +L+ GLL+PGGS
Sbjct: 141 NGNNIAIVRNLDQILVMNGLLVPGGS 166
>05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737
Length = 767
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 96 RRTKKIPSRQRDEKEKYDPNGFRDALVQGLE 188
RR KK D+K + P G R+ + QGL+
Sbjct: 330 RRAKKFLFGTMDDKSSFKPQGTRELIHQGLQ 360
>01_07_0280 + 42452993-42453337,42453778-42453981
Length = 182
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 360 ASIGLGGFPVHRHRPTGQQETAGDKHIEYG 271
A++G GG+ H HR +Q + G K +YG
Sbjct: 141 AAVGAGGYAYHEHREQ-KQASYGAKEQQYG 169
>09_06_0089 +
20781086-20782985,20783463-20783538,20783593-20783669,
20784301-20784405,20784601-20784659
Length = 738
Score = 27.5 bits (58), Expect = 3.9
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 187 SARAVISTPLT-NS*IRLARNSTTGAMARSIFDVLIAGGLLLPGGSVS 327
S AV S+ ++ +S + +NST GA+ + D GG PGG VS
Sbjct: 288 SKYAVTSSKMSIHSVVMDKKNSTRGALIPDLMDAGEHGGTRHPGGHVS 335
>07_01_0183 +
1297445-1297796,1297896-1298424,1298548-1298630,
1298901-1298989,1299091-1299164,1300196-1300246,
1300439-1300515,1302199-1302863
Length = 639
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 323 TDPPGSRRPPAISTSNMDLAIA 258
+ PP S RPPA+S ++M L A
Sbjct: 614 SSPPASARPPAVSIAHMPLFAA 635
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 335 PSIDTDPPGSRRPPA 291
PS+D +PPG PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>03_01_0603 + 4445977-4446882
Length = 301
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 375 VVGENASIGLGGFPVHRHRPTGQQETAGDKHIEYGPRHSAGSRVSSQPNLGI 220
V+GE A +G G +H G + +GD+H + G G+ S N+ I
Sbjct: 203 VIGETAVVGYGVSILHAVTLGGTGKESGDRHPKVGDGVLIGAGASVLGNVHI 254
>11_06_0128 - 20389375-20389781,20389988-20392787
Length = 1068
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 229 IRLARNSTTGAMARSIFDVLIAGGLL 306
+ LARN+ TGA+ R +F++L +L
Sbjct: 511 LNLARNNFTGAIPRRLFNILSLSKIL 536
>06_03_1380 +
29747187-29747267,29747349-29747481,29747758-29747770,
29748027-29748118,29749011-29749831,29750375-29750677
Length = 480
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 129 DEKEKYDPNGFRDALVQGLERAGGDLDAAYKF 224
D K +Y+ + R ALV ++R GG A F
Sbjct: 273 DGKPEYNQDAHRQALVDWVDRVGGTASAGMVF 304
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 351 GLGGFPVHRHRPTGQQETAGDKHIEYGPRHSAGSRVSSQPNLG 223
G GG+P + +P Q+ET G YG + + S ++P+ G
Sbjct: 301 GSGGYP--KPKPYSQEETQGSYGYGYGEKPAYESGGYNKPSYG 341
>02_01_0771 - 5748604-5749500
Length = 298
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 375 VVGENASIGLGGFPVHRHRPTGQQETAGDKHIEYG 271
V+GE A +G G +H G E GD+H + G
Sbjct: 188 VIGETAVVGDGVSILHHVTLGGTGEAVGDRHPKVG 222
>11_06_0516 + 24502645-24504507
Length = 620
Score = 26.2 bits (55), Expect = 9.1
Identities = 23/62 (37%), Positives = 29/62 (46%)
Frame = +1
Query: 127 EMRKRSMTLTGSATPLSRVWSARAVISTPLTNS*IRLARNSTTGAMARSIFDVLIAGGLL 306
E R R LT +A P V R +I L +R A A +S FD LIA GL+
Sbjct: 188 EARLRGCVLTLAAFPECAVIKKRLLIHWWLGEGFVRSA------AEGKSRFDELIAKGLI 241
Query: 307 LP 312
+P
Sbjct: 242 VP 243
>11_01_0287 -
2137425-2137581,2137981-2138117,2138246-2138515,
2138591-2138716,2138790-2138932,2139032-2139117,
2139574-2139752,2139941-2140210,2140282-2140380
Length = 488
Score = 26.2 bits (55), Expect = 9.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 244 NSTTGAMARSIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSD 372
+S A+ R I L+A G LL GGS ++TC FS+
Sbjct: 81 HSMVVALGRDISGKLMATGGLLIGGSSGSYNPKLMSSTCKFSE 123
>07_03_0391 -
17587144-17587323,17587460-17587566,17587664-17587742,
17587850-17587939,17588337-17588588,17588748-17588894,
17589071-17589246,17589303-17589394,17589582-17589673
Length = 404
Score = 26.2 bits (55), Expect = 9.1
Identities = 23/97 (23%), Positives = 43/97 (44%)
Frame = +1
Query: 82 EKPYIVEQKKFQADKEMRKRSMTLTGSATPLSRVWSARAVISTPLTNS*IRLARNSTTGA 261
+ P IVE+ K + D ++KR + +G + +T +TN R++ N G
Sbjct: 244 DNPKIVEELKEEHDVILKKREVMNSGFTWEEYK----SLKFTTQVTNEITRIS-NVAPGV 298
Query: 262 MARSIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSD 372
+++ DV + G + G V + + N +F D
Sbjct: 299 FRKTLTDVQVNGYTIPSGWLVMISPMAVHLNPELFED 335
>07_03_0272 -
16143201-16144937,16145346-16145351,16145406-16145535,
16145613-16145773,16146608-16146725,16147328-16147441,
16149378-16149469,16149906-16149986,16150168-16150473
Length = 914
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = -2
Query: 366 ENASI--GLGGFPV-HRHRPTGQQ 304
EN+S+ G GG + HRH P GQQ
Sbjct: 611 ENSSVYNGSGGLQIGHRHLPAGQQ 634
>02_05_0854 -
32267047-32267298,32267383-32268194,32268289-32268421,
32268530-32268619
Length = 428
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 129 DEKEKYDPNGFRDALVQGLERAGG 200
D K YD N R LV ++R GG
Sbjct: 238 DGKPNYDQNAHRQELVNWVDRVGG 261
>02_05_0682 +
30857876-30858106,30858187-30858399,30858867-30859067,
30859832-30860086,30860189-30860884
Length = 531
Score = 26.2 bits (55), Expect = 9.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +3
Query: 66 YESEGRKTIY----RRTKKIPSRQRDEKEKYDPNGFRDALVQGLERAGGDLDA 212
YE RK++ +R+ ++P QR D +G D L QG++ GG DA
Sbjct: 37 YEDALRKSLLYFEAQRSGRLPHNQRVAWR--DHSGLTDGLEQGVDLVGGYYDA 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,076,531
Number of Sequences: 37544
Number of extensions: 237068
Number of successful extensions: 947
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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