Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A18
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0184 - 20737884-20738179,20738611-20739169,20740009-207404...    27   6.3  

>02_04_0184 -
           20737884-20738179,20738611-20739169,20740009-20740440,
           20740556-20740957
          Length = 562

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -3

Query: 385 IRSLFFVNDKLRFTYAILSASSD-KSYVFNLARTYHGLL*HLRITYYIDSIIFFFILKKS 209
           I++LFF+   LR    +L   ++ K +V  +A   H L  H+R  Y++D    F  L   
Sbjct: 287 IQALFFM--ALRCALQLLKHDNEGKEFVERIATRLHALSYHMRSYYWLD----FQQLNDI 340

Query: 208 HRY*TMQPSLT 176
           +RY T + S T
Sbjct: 341 YRYKTEEYSHT 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,097,024
Number of Sequences: 37544
Number of extensions: 192946
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)