Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A18
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39998-8|AAA81104.1|  419|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U53150-1|AAA96123.2|  302|Caenorhabditis elegans Serpentine rece...    27   5.7  
Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical p...    27   7.5  
Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>U39998-8|AAA81104.1|  419|Caenorhabditis elegans Hypothetical
           protein ZK622.1 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 185 WLHGLVPMAFL*NEKENDTIYVIRYSEVL 271
           W HGL+P A +    END  +++R S ++
Sbjct: 32  WYHGLLPRADINTLLENDGDFLVRTSHIV 60


>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = +1

Query: 433 QSTLLIQHRTSLIKNFKRKKI 495
           +S ++++H  SL+KN+++KKI
Sbjct: 18  RSHVILKHENSLLKNYQKKKI 38


>U53150-1|AAA96123.2|  302|Caenorhabditis elegans Serpentine
           receptor, class sx protein32 protein.
          Length = 302

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 147 TNGGLLLPLFQGNRRIHAPCHY---FQCIS 67
           T   +++ LF   +  H+PCHY   F C++
Sbjct: 25  TGNSIMIILFIKEKNFHSPCHYMITFSCLA 54


>Z49968-12|CAA90264.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 408 LQSFLNV*YVPYSLLMTNCDLRTQFCQRQVIRVMYLILLELTMGFYSTSE 259
           L  +LNV  + YSL++  CD       R+ +R+   IL+ + +G  S  E
Sbjct: 405 LMHWLNVQEIAYSLVLYQCDFHKTNWTRRCLRMADAILM-VALGTESKEE 453


>Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 408 LQSFLNV*YVPYSLLMTNCDLRTQFCQRQVIRVMYLILLELTMGFYSTSE 259
           L  +LNV  + YSL++  CD       R+ +R+   IL+ + +G  S  E
Sbjct: 405 LMHWLNVQEIAYSLVLYQCDFHKTNWTRRCLRMADAILM-VALGTESKEE 453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,392,783
Number of Sequences: 27780
Number of extensions: 196443
Number of successful extensions: 380
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)