Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A17
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 1.8
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 2.3
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.1
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 3.1
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 4.1
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 5.4
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.1
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 7.1
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar... 25 7.1
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 24 9.4
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 219 VASSDAFFLKWG--SDSAPPSSQKTWVQPLSPNVSPTI 326
V+SS + W + SA PS+ W QP +P +P +
Sbjct: 416 VSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPAL 453
>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 2.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 295 NHYLLTSPRQSVINICIRHMNRTK 366
NHY + S++N C+R++ +K
Sbjct: 22 NHYDMQREESSIVNACLRYLGYSK 45
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 3.1
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 297 PLSPNVSPTIRYQYMYSPYESH-KTYQLQAPQYSQPEVPIHQNMAPIPISIP 449
P+ PNV + YS S+ +TYQ A + +P AP+P+ P
Sbjct: 142 PVRPNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVPPP 193
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.8 bits (54), Expect = 3.1
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +3
Query: 255 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAP 431
S S+P S P SP+ SPT YSP + +Y +P YS P P + +P
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPT---SPSYSP--TSPSYSPTSPSYS-PTSPSYSATSP 1611
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 4.1
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Frame = +3
Query: 291 VQPLSPNVSPTIR-----YQYMYSPYESHKT-YQLQAPQYS-QPEVPIHQNMAPIPIS 443
V P +PN ++ ++ SP ES + + LQ +S +PE PI Q IP+S
Sbjct: 190 VSPSNPNFLTPLKPIDGNQEWQQSPLESPLSMHSLQESLHSVEPESPIFQQAPQIPLS 247
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 315 SPTIRYQYMYSPYESHKTYQLQAPQYSQ 398
SP+ R+ YSP TYQ + YSQ
Sbjct: 321 SPSSRFPTPYSPSVPFGTYQEKEKSYSQ 348
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 24.6 bits (51), Expect = 7.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 273 SSQKTWVQPLSP--NVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPI 413
SS K P +P ++SP + YSP E+ Y ++P+ S VP+
Sbjct: 653 SSPKRQSVPSTPKASLSPRVHKSMTYSPSEASPLYANKSPK-SSTMVPL 700
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 24.6 bits (51), Expect = 7.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 125 VLCSLF*TFNQNYWLQSSIKGYGRY 51
V+C L NQN+W+ + I R+
Sbjct: 1157 VICFLISVINQNFWMSTLISQAWRF 1181
>SPAC15E1.03 |rpl36a||60S ribosomal protein
L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 268 GAESDPHFKKKASDDATIAKITRKLIIRLVCM 173
G ++ P F KKA K+T+K+++RL C+
Sbjct: 51 GGQTKPVFHKKA-------KVTKKVVLRLECV 75
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 255 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQ 374
S++ P K+ P+S +SP + SP +H T++
Sbjct: 8 SETLPKQESKSSSAPVSNFLSPNNLTEQTCSPLRAHSTFK 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,233
Number of Sequences: 5004
Number of extensions: 41661
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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