Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A17
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    30   0.99 
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409...    28   3.0  
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909...    28   4.0  
09_04_0303 - 16505782-16506902,16507232-16507292                       27   5.3  
03_02_0220 - 6531255-6532667                                           27   5.3  
02_02_0400 + 9836045-9837115,9837474-9838577                           27   5.3  
03_01_0525 + 3952095-3952217,3953131-3953614,3953695-3953750,395...    27   7.0  
03_06_0103 + 31661707-31662798,31662806-31662833,31663632-316637...    27   9.2  
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790...    27   9.2  

>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = +3

Query: 255  SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAP 431
            S S  P+S      P SP+ SPT    Y YSP  +  +Y   +P YS P  P +   +P
Sbjct: 1710 SPSYSPTSPSYSYSPTSPSYSPT-SPSYNYSP--TSPSYSPTSPSYS-PTSPSYSPTSP 1764



 Score = 28.7 bits (61), Expect = 2.3
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 255  SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYS-QPEVPIHQNMAP 431
            S S  P+S      P SP+ SPT    Y YSP  +  +Y   +P Y+  P  P +   +P
Sbjct: 1694 SPSYNPTSPSYSYSPTSPSYSPT-SPSYSYSP--TSPSYSPTSPSYNYSPTSPSYSPTSP 1750


>03_06_0642 +
           35239658-35240083,35240167-35240238,35240305-35240919,
           35241253-35241435,35241604-35241663,35241733-35241936,
           35242497-35242745,35243609-35243707,35243760-35243858,
           35244463-35244480,35244668-35244862,35244981-35245073,
           35245265-35245531,35245884-35246102
          Length = 932

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +3

Query: 258 DSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPY--ESHKTYQLQAPQYSQPEVPIHQNMAP 431
           DS+P    + W  P +P   P+ R +   +P+   S  +     P    P  P  ++ +P
Sbjct: 6   DSSPAPPHRDWFFPPAPPFLPSSRARTPRAPFPSTSRSSNPYSFPDRRPPPTPRSRSRSP 65

Query: 432 IP 437
           +P
Sbjct: 66  LP 67


>10_07_0061 + 12489552-12489674,12490761-12490836,12490916-12490980,
            12491089-12491166,12492156-12492236,12492813-12492974,
            12493328-12493426,12493509-12494797,12495063-12495286,
            12495373-12495500,12495596-12495634,12495724-12497178
          Length = 1272

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 297  PLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQ 419
            PL+P     ++ Q+  +P +  +  QLQ  Q  Q +  I Q
Sbjct: 1113 PLTPQQQMQLQQQFQQNPLQQQQLQQLQQQQQQQQQQQIQQ 1153


>09_04_0303 - 16505782-16506902,16507232-16507292
          Length = 393

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +2

Query: 242 FEMGVGLSSAVITEDLGSTIIS*RLPDNPLSIYVFAI*IAQNISTASTAILSARSSDP 415
           F +G GL SAV T    + ++  RL   P   +  A  +  + + A+TAIL  RS  P
Sbjct: 72  FVLGAGLFSAVSTALYPAVVLKTRLQVAPSPAHAAASSLPPSAAAAATAIL--RSEGP 127


>03_02_0220 - 6531255-6532667
          Length = 470

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 9   GARIFVPKINEYFCVTPITLYTRL 80
           GAR  + K+ E+ CVT + +YT L
Sbjct: 205 GARQLIEKMPEFGCVTNVAVYTAL 228


>02_02_0400 + 9836045-9837115,9837474-9838577
          Length = 724

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 261 SAPPSSQKTWVQPLSPNVSP--TIRYQYMYSPYESHKTYQL 377
           SA P S   W+ PL  N +   T   +Y YSPY  HK +++
Sbjct: 393 SAVPPSYPAWITPLLLNAADVGTTNIRY-YSPY-FHKNFEI 431


>03_01_0525 +
           3952095-3952217,3953131-3953614,3953695-3953750,
           3953942-3954018,3954862-3954958,3955274-3955407,
           3955760-3955825,3955954-3956044
          Length = 375

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 21/71 (29%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
 Frame = +3

Query: 243 LKWGSDSAPPSSQKT-WVQPLSPNVSPTIRYQYMYSPY----ESHKTYQLQAPQYSQPEV 407
           L WG   A    Q   W Q   PN   +  Y Y Y  Y    +    Y   A      E 
Sbjct: 269 LSWGRSPASKQDQSAVWSQQADPNQWASAYYGYGYDAYGYAQDPSYAYNSYAGYTQLRER 328

Query: 408 PI-HQNMAPIP 437
           PI HQ +  +P
Sbjct: 329 PIWHQQLEAMP 339


>03_06_0103 +
           31661707-31662798,31662806-31662833,31663632-31663721,
           31664725-31664789,31664864-31664980
          Length = 463

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 213 AIVASSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTI 326
           A+VAS  + F++ GSD  P S  +      SP VS T+
Sbjct: 67  ALVASDLSDFVRSGSDELPRSVTQLAKLAASPEVSATV 104


>01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099,
            40479205-40480047,40480176-40480269,40480356-40481207,
            40481367-40481437,40481750-40481821,40481977-40482019
          Length = 1530

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 267  PPSSQKTWVQPLSPNVSPTIRYQYM-YSPYESHKTYQLQAPQYSQP-EVPIHQN 422
            PPS   +  Q LS ++S TIR +   ++  + HK         +QP ++P+  N
Sbjct: 1394 PPSQHGSATQALSTDISSTIRLKKAGHASSDDHKLESGGVTSAAQPVDIPVSTN 1447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,052,773
Number of Sequences: 37544
Number of extensions: 267636
Number of successful extensions: 690
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)