Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A17
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-10|CAA97336.2|  391|Caenorhabditis elegans Hypothetical p...    30   0.89 
U97009-3|AAC69031.1|  619|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U28941-4|AAM98024.1|  484|Caenorhabditis elegans Temporarily ass...    29   2.1  
U28941-3|AAM98025.1|  799|Caenorhabditis elegans Temporarily ass...    29   2.1  
U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily ass...    29   2.1  
U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily ass...    29   2.1  
AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical ...    29   2.1  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    27   4.8  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    27   4.8  
AC024839-3|AAF60829.1|  308|Caenorhabditis elegans T box family ...    27   4.8  
AC024839-2|AAF60830.1|  308|Caenorhabditis elegans Hypothetical ...    27   4.8  
U97013-6|AAB52337.1|  221|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine r...    27   6.3  
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z77134-7|CAJ90503.1|  121|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z77134-6|CAB00872.2|  135|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z73098-10|CAA97336.2|  391|Caenorhabditis elegans Hypothetical
           protein T21C9.9 protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = +3

Query: 285 TWVQPLSPNVSP---TIRY-QYMYSPYES-HKTYQLQAPQYSQPEVPIHQNMA-PIPISI 446
           T+ + L+P   P   T  Y QY   P +S  + YQL  P+Y QP+ P  Q ++ P P   
Sbjct: 58  TFYRDLTPFRQPYYQTASYPQYQQGPAQSLQQMYQLPNPRYIQPQAPRPQYISRPAPRPA 117

Query: 447 P 449
           P
Sbjct: 118 P 118


>U97009-3|AAC69031.1|  619|Caenorhabditis elegans Hypothetical
           protein T19H12.6 protein.
          Length = 619

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
 Frame = +3

Query: 189 MMSFLVILAIVASSDAFFLKWGSDSAPPS--SQKTW----VQPLSPNVSP-TIRYQYMYS 347
           ++ F+VILA+V    AFFL     S+  S  S +T+    +Q +SP+ SP T R ++  S
Sbjct: 104 LVQFIVILALVLGLIAFFLTRSESSSTTSEYSTRTYQNFELQTISPSSSPLTFRRRFKTS 163


>U28941-4|AAM98024.1|  484|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform c protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 258 DSAPPSSQKTWVQPLSPNVSP---TIRYQYMY-SPYESHKTYQLQAPQYSQPEVPIHQNM 425
           D +P S   T  + + P+++P      + + +  P+      Q  A Q+  P VP H+ +
Sbjct: 164 DLSPTSRDSTQFEQI-PSIAPEESAFGHDFEHVPPHLKTAAEQYYAQQHQPPPVPQHKIV 222

Query: 426 APIPIS 443
            P+PIS
Sbjct: 223 QPVPIS 228


>U28941-3|AAM98025.1|  799|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform d protein.
          Length = 799

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 258 DSAPPSSQKTWVQPLSPNVSP---TIRYQYMY-SPYESHKTYQLQAPQYSQPEVPIHQNM 425
           D +P S   T  + + P+++P      + + +  P+      Q  A Q+  P VP H+ +
Sbjct: 164 DLSPTSRDSTQFEQI-PSIAPEESAFGHDFEHVPPHLKTAAEQYYAQQHQPPPVPQHKIV 222

Query: 426 APIPIS 443
            P+PIS
Sbjct: 223 QPVPIS 228


>U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform a protein.
          Length = 1091

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 258 DSAPPSSQKTWVQPLSPNVSP---TIRYQYMY-SPYESHKTYQLQAPQYSQPEVPIHQNM 425
           D +P S   T  + + P+++P      + + +  P+      Q  A Q+  P VP H+ +
Sbjct: 164 DLSPTSRDSTQFEQI-PSIAPEESAFGHDFEHVPPHLKTAAEQYYAQQHQPPPVPQHKIV 222

Query: 426 APIPIS 443
            P+PIS
Sbjct: 223 QPVPIS 228


>U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform b protein.
          Length = 1107

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 258 DSAPPSSQKTWVQPLSPNVSP---TIRYQYMY-SPYESHKTYQLQAPQYSQPEVPIHQNM 425
           D +P S   T  + + P+++P      + + +  P+      Q  A Q+  P VP H+ +
Sbjct: 164 DLSPTSRDSTQFEQI-PSIAPEESAFGHDFEHVPPHLKTAAEQYYAQQHQPPPVPQHKIV 222

Query: 426 APIPIS 443
            P+PIS
Sbjct: 223 QPVPIS 228


>AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical
           protein Y49F6C.6 protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +3

Query: 255 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQ---YSQPEVP 410
           ++S P S QKT  Q      +PT+  QY+YS     + Y    P+     QP+ P
Sbjct: 60  NNSKPISLQKTKTQFFLNYSNPTVLLQYLYSTTTVPRPYPTTNPKLISLQQPKTP 114


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +3

Query: 255  SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAP 431
            S S  P+S      P+SP+ SPT      YSP  +  +Y   +P YS P  P +   +P
Sbjct: 1593 SPSYSPTSPAAGQSPVSPSYSPT---SPSYSP--TSPSYSPTSPSYS-PTSPSYSPTSP 1645


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +3

Query: 255  SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAP 431
            S S  P+S      P+SP+ SPT      YSP  +  +Y   +P YS P  P +   +P
Sbjct: 1600 SPSYSPTSPAAGQSPVSPSYSPT---SPSYSP--TSPSYSPTSPSYS-PTSPSYSPTSP 1652


>AC024839-3|AAF60829.1|  308|Caenorhabditis elegans T box family
           protein 30 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +3

Query: 297 PLSPNVSPTIRYQY---MYSPYESHKTYQLQAPQYSQPEVPIHQNMAP 431
           P SP  S   +YQY    YSP++S   Y      YS    P  Q+ +P
Sbjct: 249 PSSPLYSSQNQYQYPFHPYSPFDSSIPYPYSPMDYSYYFNPTFQSFSP 296


>AC024839-2|AAF60830.1|  308|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.5 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +3

Query: 297 PLSPNVSPTIRYQY---MYSPYESHKTYQLQAPQYSQPEVPIHQNMAP 431
           P SP  S   +YQY    YSP++S   Y      YS    P  Q+ +P
Sbjct: 249 PSSPLYSSQNQYQYPFHPYSPFDSSIPYPYSPMDYSYYFNPTFQSFSP 296


>U97013-6|AAB52337.1|  221|Caenorhabditis elegans Hypothetical
           protein F28H1.1 protein.
          Length = 221

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 333 QYMYSPYES--HKTYQLQAPQYSQPEVPIHQNMA 428
           QY  + Y++  H+ YQ   P Y QPE P+H   A
Sbjct: 92  QYQQNQYQARQHQYYQNPPPFY-QPEQPVHYQSA 124


>AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein98 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 189 MMSFLVILAIVASSDAFFLKWGSDSAPPSS 278
           +  F+ ++A + SS  FF + G+D  PP S
Sbjct: 79  LCDFVAMIATIVSSGMFFDEEGTDCTPPVS 108


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 252 GSDSAPPSSQKTWVQPLSPNVSPTIR 329
           GSD  PP+S +  +  +SPN+   IR
Sbjct: 205 GSDVLPPASSEWHISKISPNLENKIR 230


>Z77134-7|CAJ90503.1|  121|Caenorhabditis elegans Hypothetical
           protein R09H10.3b protein.
          Length = 121

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 207 ILAIVASSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQ 374
           ILA +  +D +  K GS+    + +  WV P    +  T R  Y+  PY   K  +
Sbjct: 31  ILAYIQQNDDW-TKIGSEFTQDNGRVDWVSPDFTLIPGTYRLVYITEPYYKAKNVE 85


>Z77134-6|CAB00872.2|  135|Caenorhabditis elegans Hypothetical
           protein R09H10.3a protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 207 ILAIVASSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQ 374
           ILA +  +D +  K GS+    + +  WV P    +  T R  Y+  PY   K  +
Sbjct: 45  ILAYIQQNDDW-TKIGSEFTQDNGRVDWVSPDFTLIPGTYRLVYITEPYYKAKNVE 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,261,122
Number of Sequences: 27780
Number of extensions: 238567
Number of successful extensions: 668
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)