Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A17
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.29 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.29 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.88 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   4.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   4.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   4.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.2  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 312 VSPTIRYQYMYSPYESHKTYQLQAPQYSQPE 404
           +SP     Y YSP  SH  Y +   Q+S P+
Sbjct: 261 LSPVTNNLY-YSPLLSHGLYYVDTEQFSNPQ 290


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +3

Query: 219 VASSDAFFLKWGSDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQY 392
           + S  +F   +   +  P SQ T +Q L P VSP       Y  Y         +PQY
Sbjct: 386 IGSGGSFPSLYPMATTSPQSQST-IQTLRPQVSPDRTSPMEYRLYNPALIQSQPSPQY 442



 Score = 23.8 bits (49), Expect = 0.88
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 259 SDPHFKKKASDDATIAKIT 203
           SDP F KKA  D  I K++
Sbjct: 211 SDPIFDKKAMSDLVICKLS 229


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 259 SDPHFKKKASDDATIAKIT 203
           SDP F KKA  D  I K++
Sbjct: 211 SDPIFDKKAMSDLVICKLS 229


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/48 (20%), Positives = 19/48 (39%)
 Frame = +3

Query: 306 PNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPIPISIP 449
           P +  ++   Y YS Y ++         Y + +      +  IPI +P
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIPVP 126


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/48 (20%), Positives = 19/48 (39%)
 Frame = +3

Query: 306 PNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPIPISIP 449
           P +  ++   Y YS Y ++         Y + +      +  IPI +P
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIPVP 126


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/48 (20%), Positives = 19/48 (39%)
 Frame = +3

Query: 306 PNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPIPISIP 449
           P +  ++   Y YS Y ++         Y + +      +  IPI +P
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIPVP 126


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/48 (20%), Positives = 19/48 (39%)
 Frame = +3

Query: 306 PNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPIPISIP 449
           P +  ++   Y YS Y ++         Y + +      +  IPI +P
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPIPVP 126


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 213 AIVASSDAFFLKWGSDSAPPSSQKTWVQPLSP 308
           A + S+   +   GS S  PSS  ++   +SP
Sbjct: 74  AAITSTSPSYPGGGSSSPSPSSPSSFFSSVSP 105


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 405  VPIHQNMAPIPISIP 449
            V IH+  AP+P ++P
Sbjct: 1101 VMIHEENAPLPPALP 1115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,455
Number of Sequences: 438
Number of extensions: 3180
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)