Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A16
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    28   0.66 
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    27   1.2  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   2.7  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   6.2  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   8.2  

>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 432 FSWNAPDFSIVYR--SFRSLSSSTAVPFFFHWYSIPSETCFRV 310
           F+W+  + S   R  SF  L S T+V    HW+ I     FR+
Sbjct: 310 FNWSCQNISSYQRLVSFAHLYSYTSVKCLVHWFQIMRSAEFRM 352


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 311 TLKHVSDGIEYQWKKNGTAVEE 376
           T  HVS   EY++K+NG   EE
Sbjct: 174 TTSHVSPCFEYRYKENGETTEE 195


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +2

Query: 350 KKNGTAVEELSDLKDRYTIEKSGAFQLKGRSTEDDFGNY 466
           ++NG+   E++D+K R   E++G    KG S+++   ++
Sbjct: 21  RRNGSIHGEITDVKRRRLSERNGYGDKKGSSSKEKTSSF 59


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 335 IEYQWKKNGTAVEELSDLKDRYTIEKSGAFQL 430
           +E  ++KN   +EEL++LK+   +E S   +L
Sbjct: 440 MENVFRKNEYLMEELNELKNNLEVESSKVLRL 471


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 353 KNGTAVEELSDLKDRYTIE----KSGAFQLKGRSTEDDFGN 463
           K+   +EE SD KDR TIE     +    +K + +E   GN
Sbjct: 70  KSSKGLEEESDSKDRKTIETDQPSNNIGDIKSQKSEKSNGN 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,416
Number of Sequences: 5004
Number of extensions: 31816
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)