Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A15
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   2.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   2.6  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    24   6.1  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    24   6.1  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    23   8.1  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    23   8.1  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    23   8.1  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 177 RCIWRKQTQCEIRAWRTDRT**NFRRSS 260
           RCIWRK  +C   A+ ++RT   FR  S
Sbjct: 163 RCIWRKGKKCH-SAYISERTKPIFRSES 189


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 62   CVYCVWYYAWLV 97
            C +C WYYA ++
Sbjct: 1166 CTFCCWYYAGII 1177


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -2

Query: 312 NLNTNASQEWCILLYFTTSFFES 244
           +++ N+  +WC + + T+ FFE+
Sbjct: 739 DISINSGSKWCYVDFNTSVFFEA 761


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 147 PVSLHLHSPPSGAALQATSHA*YQTQYTHF 58
           P   H+       ++++ +H  YQTQ++H+
Sbjct: 248 PFGQHVRHKVKRLSVRSPAHPIYQTQHSHY 277


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 119 PLVQPCKLPAMHNTKHNTRIFSKFTLKLS 33
           P+V  CK PAM  +  +  +F  F L+L+
Sbjct: 560 PIVHGCKRPAMPGSYQSNDVFG-FPLQLN 587


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 149  LQFPFIFIRRPLVQPCKLPAMHNTKHNTRIFSKFTLKLSGLYSYGRP 9
            + F F+ +R   ++  K        +N   FSK  L +    S+G+P
Sbjct: 1039 IPFYFVLLRGETLKDLKKRLQKRLGYNDTQFSKVKLAVLQAQSFGKP 1085


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 14/67 (20%), Positives = 30/67 (44%)
 Frame = -3

Query: 203 LSLFSPDASFSMTNTRE*LQFPFIFIRRPLVQPCKLPAMHNTKHNTRIFSKFTLKLSGLY 24
           + +++ +AS   +   +  Q   I++   L QP +  +  +      +FS++T  +  L 
Sbjct: 85  IRVYAVNASLDHSACMQAFQDAGIYVLSDLAQPYEAISSSDPTWTVDLFSRYTEVVDSLA 144

Query: 23  SYGRPLG 3
            Y   LG
Sbjct: 145 PYDNMLG 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,316,931
Number of Sequences: 5004
Number of extensions: 23249
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)