Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A15
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0077 + 26215954-26216224,26216355-26216579,26217099-262172...    30   0.33 
11_06_0179 + 20952070-20955228                                         28   1.8  
01_03_0227 + 13967966-13968559                                         26   5.4  
11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890...    26   7.2  
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818...    26   7.2  
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715...    26   7.2  
06_01_1016 + 7944817-7945266,7945461-7945922                           25   9.5  

>01_06_0077 +
           26215954-26216224,26216355-26216579,26217099-26217247,
           26217353-26217629,26217956-26218236
          Length = 400

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
 Frame = +1

Query: 7   RGLP*EYNPDNFRVNFEKMRVLCLVLCMAGSLQGCTRGRRMKMKGNWSYSLVLVIEKDAS 186
           RG+P + +  +  +  E  R L  +LC  G + GC        KG  + SL LV E    
Sbjct: 133 RGVPMDDDTVHLDMEMEWFRDLLGMLCTGGDMDGC--------KGMMNQSLFLVGE---I 181

Query: 187 GENKLNVKFEPGELTEPDRTF-EEARGKIKKYTPFLAGVGVK 309
           G N  N+    G   E  R F      KI      L G+G K
Sbjct: 182 GGNDYNLPLMSGMSIEKIRNFTPSVIAKISSIITELIGLGAK 223


>11_06_0179 + 20952070-20955228
          Length = 1052

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 285  WCILLYFTTSFFESSIRFCQFA 220
            WCI + +T+ +  SSI  C+FA
Sbjct: 947  WCIYMNWTSDWTPSSIDMCEFA 968


>01_03_0227 + 13967966-13968559
          Length = 197

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 159 QRIAPVSLHLHSPPSGAA 106
           +R+ P  +HLH  PSGAA
Sbjct: 164 RRMCPSHIHLHPRPSGAA 181


>11_03_0008 +
           8901817-8902146,8903058-8903120,8903226-8903321,
           8903924-8903971,8904558-8904629,8905373-8905431,
           8905582-8905672,8905749-8905886
          Length = 298

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 94  GSLQGCTRGRRMKMKGNWSYSLVLVIE 174
           GS+ GCT  R +KM   W ++   V++
Sbjct: 190 GSVGGCTYPRPVKMPSKWVFNSYTVLK 216


>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
            26481936-26482081,26482185-26482341,26482489-26482547,
            26482787-26482946,26483020-26483169,26483279-26483415,
            26483518-26483664,26483733-26483834,26483917-26483974,
            26484084-26484185,26484322-26484379,26484717-26484775,
            26486488-26486525,26486688-26486814,26486900-26487067,
            26487879-26488010,26488089-26488198,26488273-26488333,
            26488761-26488938,26489041-26489246,26489431-26489550,
            26489631-26489729,26489968-26490156,26490291-26490430,
            26491149-26491316,26491438-26491605,26491764-26491931,
            26492250-26492417,26492533-26492700,26492853-26493020,
            26493118-26493285,26493471-26493638,26493756-26493920,
            26494679-26494850,26495012-26495175,26495296-26495405,
            26495481-26495596,26495686-26495766,26495849-26496034,
            26496203-26496547,26496637-26496777,26496869-26496916,
            26497162-26497242,26497350-26497406,26497495-26497575,
            26497675-26497757,26497842-26497968
          Length = 2159

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 129  HSPPSGAALQATSHA*YQTQYTHFLKI 49
            HS  + A+L + SH   Q+Q TH+L I
Sbjct: 1960 HSNQAKASLSSASHLGQQSQLTHWLGI 1986


>04_01_0556 -
           7156851-7157096,7157288-7157530,7158112-7158153,
           7158324-7158425,7159209-7159342,7161071-7161131,
           7161192-7161284,7161557-7161639,7161984-7162239
          Length = 419

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 180 CIWRKQTQCEIRAWRTDRT**NFRRSSW 263
           CI +  T  E+R+WR   T  N  R  W
Sbjct: 234 CIGKSLTMWELRSWRPYGTTINLMRHKW 261


>06_01_1016 + 7944817-7945266,7945461-7945922
          Length = 303

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 150 APVSLHLHSPPSGAALQATSH 88
           A ++ H+H PP+ A   A+SH
Sbjct: 109 ATMARHVHHPPTSAPASASSH 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,480,019
Number of Sequences: 37544
Number of extensions: 147977
Number of successful extensions: 369
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)