Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A14
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    28   0.66 
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    25   6.1  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    24   8.1  

>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 5   RSWRRTLLSTTYVFLVLSECIGVSDTQTAQIYLFIKFQD 121
           R WR  + S  Y+ + +  CIG S     Q Y F K  +
Sbjct: 337 RKWRLGVESLPYLAIFVGVCIGCSSVALFQPYYFKKMDE 375


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 299 CFRPGYFKRCVRGARSE 349
           CFRP  FK C++  +S+
Sbjct: 272 CFRPVLFKNCLKTVKSK 288


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 253 RCFLLFRFY*TYRGIVF*TRIL*KMC-SGSKIRS-TTARLYQ 372
           RC L+  +Y +Y+G++   RI+      G K+ S  T R Y+
Sbjct: 245 RCLLIDSWYNSYQGVIGLVRIMEGFIKKGGKVMSVNTGRKYE 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,303
Number of Sequences: 5004
Number of extensions: 27524
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)