Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A14
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0431 - 15858381-15858529,15858864-15858935,15859045-158591...    27   4.5  
04_03_0421 - 15725045-15725193,15725528-15725599,15725709-157257...    27   4.5  
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086...    27   7.8  

>04_03_0431 -
           15858381-15858529,15858864-15858935,15859045-15859120,
           15860651-15860734
          Length = 126

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 407 NSHCLNNGFRRHWYKRAVVLLILL 336
           ++H +++G+R HW K   VLL+ +
Sbjct: 96  DAHNISSGWRFHWQKHLAVLLVTM 119


>04_03_0421 -
           15725045-15725193,15725528-15725599,15725709-15725784,
           15728607-15728679,15728919-15728983,15729423-15729681,
           15729761-15729931,15730014-15730846,15731097-15731390,
           15731469-15731939
          Length = 820

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 407 NSHCLNNGFRRHWYKRAVVLLILL 336
           ++H +++G+R HW K   VLL+ +
Sbjct: 790 DAHNISSGWRFHWQKHLAVLLVTM 813


>04_04_1513 -
           34107700-34107765,34108475-34108551,34108640-34108688,
           34109144-34109218,34109447-34109554,34109728-34109835,
           34110708-34111256
          Length = 343

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 387 RIPPPL-VQTGCCTSDLAPR 331
           R+PPPL + +  C SDLAPR
Sbjct: 107 RLPPPLAIASVHCLSDLAPR 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,976,316
Number of Sequences: 37544
Number of extensions: 165057
Number of successful extensions: 297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)