Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A13
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 30 0.28
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 27 1.5
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 26 4.5
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 4.5
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c... 26 4.5
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 26 4.5
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 26 4.5
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 6.0
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 25 6.0
SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha... 25 7.9
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo... 25 7.9
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 29.9 bits (64), Expect = 0.28
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -1
Query: 431 RPPLPNCSLHPRLPLH*QVQLPESLVHTYRSSQLQPTMIRRP 306
+PP+PN + P P ++ P ++ H +++ P + P
Sbjct: 90 KPPIPNAATKPTFPPQTEISNPPAVSHQSKNTSQDPPYVSTP 131
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 404 HPRLPLH*QVQLPESLVHTYRSSQLQP 324
H + LH V LPE L+ T ++ ++QP
Sbjct: 421 HGAMYLHPSVSLPEKLITTAKAQKIQP 447
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 82 VGRGRYQRSLSLPTARNIASAF 17
V G+Y SLS P+ +N++ AF
Sbjct: 76 VSDGQYLTSLSFPSLKNVSGAF 97
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 5 EGTAEGGGDISSSGQTETPLI 67
+G A+GGG +S+ T+TP++
Sbjct: 251 DGHAKGGGALSAVAATKTPIV 271
>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 154
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -3
Query: 132 AVSCWGVRENECKTAGPLAVDDIRGVSVCPLLEISPPPSAV 10
++ CW + +++C+T +GV PL P P+ +
Sbjct: 25 SLPCWKIHQSQCETVNDNNTTTFKGVKE-PLNPPEPSPNVI 64
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 25.8 bits (54), Expect = 4.5
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +2
Query: 11 TAEGGGDISSSGQTETPLISSTANGPAVLHSFSLTPQQETANEYLKFLSSRFNDADTSEI 190
T+ G S S QT+T + + P + S T T+N+ N+A+ S +
Sbjct: 171 TSPGKPSTSESSQTDTSTRPANSQTPTTTRASSYTTLVSTSNQV-------SNEAEASAV 223
Query: 191 EGAADTMPTVSDS 229
E +A+ D+
Sbjct: 224 ETSANQAQNTEDA 236
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 44 GQTETPLISSTANGPAVLHSFSLTPQQETANEY-LKFLSSRFNDADTSEIEGAADTMPTV 220
G + S N VL + S + + N+ ++FL+S N +D ++I+G + P
Sbjct: 19 GMAKAIAYSEYGNPKEVLRAVSYNVPKCSKNQVNVRFLASPINPSDINQIQGVYPSKPPF 78
Query: 221 SDSM 232
++ +
Sbjct: 79 TNDV 82
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 2 HEGTAEGGGDISSSGQTETPLISSTANGPAVLHSFSLTPQQETA 133
HE + +SSS ++ +++STAN V + S TP+ + A
Sbjct: 48 HENSFASQQSLSSSAFDDSEIVTSTANSTVVSSALS-TPKIDDA 90
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 114 VRENECKTAGPLAVDDIRGVS 52
VRE E +TA +D+I+GVS
Sbjct: 582 VRETEAETATETVLDEIQGVS 602
>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 149 ILDTHSPSPVGV*EKMSVKQLGRWPWTISEESQFAHC*KYRLR 21
++D P V + + SV+Q+ + +TI E S+F K+R++
Sbjct: 79 LVDGRDPVDVNMEDAASVEQIRKKGFTIKEGSEFKIGVKFRVQ 121
>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 47 QTETPLISSTANGPAVLHSFSLTPQQETANEYLKFLSSRFNDA 175
Q P++S P+V HSF L P + +L S+ F++A
Sbjct: 48 QQIAPMLSDAIGTPSVNHSFELAP----LDSHLVATSTTFHEA 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,179
Number of Sequences: 5004
Number of extensions: 32438
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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