Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A13
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119...    29   2.6  
12_01_0102 - 788403-788937,789051-789164,789323-789687                 28   4.6  
09_03_0097 + 12335425-12336197,12336438-12336618,12337409-123375...    28   4.6  
06_01_0823 + 6216492-6217002,6217140-6218083                           28   4.6  
12_01_0988 - 10039187-10039243,10039356-10039649,10039838-100402...    28   6.1  
09_06_0183 - 21406474-21406636,21407412-21407956                       28   6.1  
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059...    28   6.1  
08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272...    27   8.0  
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820...    27   8.0  

>08_01_0152 -
           1190358-1190462,1190648-1190765,1191134-1192691,
           1193338-1193530
          Length = 657

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 80  WPWTISEESQFAHC 39
           WPW  S+E+ FAHC
Sbjct: 374 WPWMKSQEAGFAHC 387


>12_01_0102 - 788403-788937,789051-789164,789323-789687
          Length = 337

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 50  TETPLISSTANGPAVLHSFSLTP 118
           T T LI++T N PA LHS +  P
Sbjct: 201 TTTRLINNTNNNPAALHSLTANP 223


>09_03_0097 +
           12335425-12336197,12336438-12336618,12337409-12337572,
           12338132-12338393,12338488-12338604
          Length = 498

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 515 RDDEALRWQVWRAREQRQSVVGAEHHWYRPPLPNCS 408
           R+ EA RW  WR RE   +  GA   W R  +   S
Sbjct: 50  REQEAARW--WRRREDAATTSGAAGWWRREDVATTS 83


>06_01_0823 + 6216492-6217002,6217140-6218083
          Length = 484

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +2

Query: 101 SFSLTPQQETANEYLK---FLSSRFNDADTSEIEGAADTMPTVSDSMPLLAMAANGSALL 271
           SF+L  +++ AN   +    + + F+D ++  ++   D  P V    PL A  ANG   L
Sbjct: 209 SFALRVEEDEANSCARAQGLILNTFDDLESDVLDALRDEFPRVYTVGPLAADRANGGLSL 268


>12_01_0988 -
           10039187-10039243,10039356-10039649,10039838-10040202,
           10042916-10042931
          Length = 243

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 219 SAIPCLCLRWPLTDQHYSLH 278
           S +P LC+RW L ++ ++LH
Sbjct: 204 SLLPLLCVRWTLAEKLHTLH 223


>09_06_0183 - 21406474-21406636,21407412-21407956
          Length = 235

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 455 VGAEHHWYRPPLPNCSLHPRLP-LH*QVQLPESLVHTYRSSQLQPTMIRRPRRL 297
           VGAE    RP L     +PR P L   V  P   +   RSS   P   RRPRRL
Sbjct: 92  VGAEATPPRPSLVAPPPYPRRPELAGYVSPPP--IRAARSSSATPVRARRPRRL 143


>03_05_1024 +
           29802831-29804208,29804710-29804759,29805569-29805954,
           29807753-29807813,29807921-29807941
          Length = 631

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = +2

Query: 8   GTAEGGGDISSSGQTETP------LISSTANGPAVLHSFSLTPQQETANEYLKFLSSRFN 169
           G   GG  + S G+T +P      +    A+  A +H F + PQQ+   +     S   +
Sbjct: 198 GLVLGGASLGSLGETSSPKQQASGMAGLAADPAAAMHLFLMNPQQQQQQQSRSSTSPPPS 257

Query: 170 DADTS 184
           DA ++
Sbjct: 258 DAQSA 262


>08_02_0154 -
           13324384-13325351,13326306-13326502,13326695-13327274,
           13328324-13328446,13328803-13329130
          Length = 731

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 156 RAGSMTRTLQRLKAPQIRCRLSAIPCLCLR 245
           RAG   R  + +   ++ C  S+ PC C+R
Sbjct: 623 RAGGAYRETRNMTRNELECSSSSTPCRCMR 652


>01_06_1201 -
           35380338-35380496,35381200-35381322,35381521-35382066,
           35382285-35382392,35382695-35383225,35383614-35383743,
           35384225-35385081,35385303-35385408,35387119-35387230,
           35389255-35389347,35389723-35389771,35389859-35389897,
           35390671-35390757,35391613-35391873,35391957-35392166,
           35392413-35393507
          Length = 1501

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 87  GPLAVDDIRGVSVCPLLEISPPPSAVPS 4
           G LA+D     S  PLL   P PS+ PS
Sbjct: 92  GDLALDSSSAASTDPLLHPPPSPSSTPS 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,382,390
Number of Sequences: 37544
Number of extensions: 268829
Number of successful extensions: 1004
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)