Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A13
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical...    35   0.047
U41028-5|AAA82358.1|  185|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z68301-1|CAA92624.1|  360|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z69664-3|CAC42312.1|  339|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z69664-2|CAA93516.2|  342|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical
           protein Y47D3B.3 protein.
          Length = 446

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 406 CTLAFHCTSKCS-CRSHWCTLIARLSCN 326
           CT  +HC S C  CRS  CT I  LSC+
Sbjct: 350 CTRDYHCPSSCDVCRSGICTHILNLSCS 377


>U41028-5|AAA82358.1|  185|Caenorhabditis elegans Hypothetical
           protein C25G6.1 protein.
          Length = 185

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = -3

Query: 282 KGGESNADPLAAIASRGMESLTVGIVSAAPSISEVSASLNLLDRNFRYSFAVSCWGVREN 103
           K G ++  P+  +  +  +S    ++S A +  +    +  + +NFRYS A +C   R +
Sbjct: 6   KQGVAHYCPITGVICKRSQSQKEQVLSTATNAMDGMGIIRCVLKNFRYSTAATC-DNRND 64

Query: 102 ECKT 91
           +C+T
Sbjct: 65  QCQT 68


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
            protein F40G12.3 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 25/116 (21%), Positives = 33/116 (28%)
 Frame = +2

Query: 71   STANGPAVLHSFSLTPQQETANEYLKFLSSRFNDADTSEIEGAADTMPTVSDSMPLLAMA 250
            STAN PA    F +T   E+ +      ++  N   TSEI          S S     MA
Sbjct: 815  STANHPAFTKIFPITMNLESYHFQSTITATTINFTGTSEISSELTPTSPGSASKTTSGMA 874

Query: 251  ANGSALLSPPLLQXXXXXXXXXXXXXXXXTSDKCXXXXXXXXXXXXXEGEGAVSSS 418
               S+   P  +                 T  K                  + SSS
Sbjct: 875  KRASSSKHPSAVTSSARSSAVTSGLTNNSTEKKTQNSTTAASSVSTQVPNSSASSS 930


>Z68301-1|CAA92624.1|  360|Caenorhabditis elegans Hypothetical
           protein W01B6.1 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 382 SKCSCRSHWCTLIARLSCN 326
           SKC+C+  WC  +   +CN
Sbjct: 333 SKCNCKFEWCCKVVCQTCN 351


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical
           protein R09E10.7 protein.
          Length = 1717

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 388 CTSKCSCRSHWCTLIARLS 332
           CT +CS RS WC  +  LS
Sbjct: 245 CTCECSNRSSWCKHVVALS 263


>Z69664-3|CAC42312.1|  339|Caenorhabditis elegans Hypothetical
           protein K04D7.2b protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 146 KFLSSRFNDADTSEIEGAADTMPTVSDS--MPLLAMAANGSALLSPP 280
           +F+      AD  EI G  + +  + D   +PL   + +GS LLSPP
Sbjct: 68  QFVGGEDVGADWDEIGGCEELVAELKDRIILPLRFASQSGSHLLSPP 114


>Z69664-2|CAA93516.2|  342|Caenorhabditis elegans Hypothetical
           protein K04D7.2a protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 146 KFLSSRFNDADTSEIEGAADTMPTVSDS--MPLLAMAANGSALLSPP 280
           +F+      AD  EI G  + +  + D   +PL   + +GS LLSPP
Sbjct: 71  QFVGGEDVGADWDEIGGCEELVAELKDRIILPLRFASQSGSHLLSPP 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,054,456
Number of Sequences: 27780
Number of extensions: 196901
Number of successful extensions: 588
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)