Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A12
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   258   3e-70
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   258   4e-70
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   3.4  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   5.9  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  258 bits (633), Expect = 3e-70
 Identities = 124/183 (67%), Positives = 147/183 (80%), Gaps = 1/183 (0%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 203
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 383
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 384 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEGKENAKPRYKAPK 560
           IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEGK   KP  KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 561 IQR 569
           IQR
Sbjct: 178 IQR 180


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  258 bits (632), Expect = 4e-70
 Identities = 123/183 (67%), Positives = 147/183 (80%), Gaps = 1/183 (0%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 203
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 383
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 384 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEGKENAKPRYKAPK 560
           IPGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEGK   KP  KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 561 IQR 569
           IQR
Sbjct: 178 IQR 180


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 268 EWPFDIKRRTRLLVRTPCFIGKPCLSLP 185
           EWP  +K   +LLVRT  +   PC + P
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = -1

Query: 529 SLPSLAGKXXXXXXXXXXXXXFKLNNLRILDARL-GPRRRGTSPSVSPGISCAPLRTMTR 353
           SLPS+ G+                N  + ++  +  P ++ TSP  +   + AP+   + 
Sbjct: 35  SLPSILGEKSEVSKPFKPAVTDPSNAKKEINMAIESPSKKATSPKKATPAAVAPVEATSA 94

Query: 352 AKTERLASTMQP 317
             T    ++M P
Sbjct: 95  VDTSEAVASMTP 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,292
Number of Sequences: 5004
Number of extensions: 45327
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)