Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A11
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 29 0.24
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.7
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.7
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 3.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 3.0
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 25 5.2
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr... 25 6.9
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 9.1
SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|... 24 9.1
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 24 9.1
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 29.5 bits (63), Expect = 0.24
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 319 FLLFFFNRHSGFQIFYQFIFD 257
F L FFNRHS F + QF+ D
Sbjct: 721 FTLHFFNRHSPFHLISQFLQD 741
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 1.7
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -2
Query: 311 FFLQQAFWISNLLPIYLRLPDML-YGKNTQPCGKI*GLH--W*VCL 183
F++ FWI LL ++L LP+ L ++ + KI G W CL
Sbjct: 316 FYITSTFWIIYLLYVWLILPESLDVSESKEQQNKISGFSSIWRSCL 361
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 26.6 bits (56), Expect = 1.7
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 350 CDHILEIQFPLRR 388
CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 3.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -3
Query: 442 MSRVLRSITKNHFIIAR 392
+SR++R++ KNH IIA+
Sbjct: 636 ISRIIRNVWKNHVIIAK 652
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 3.0
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +2
Query: 221 MVEYFFHRACQVIEDKLVEDLKSRMPVEEKKKKV 322
+++ ++H AC+V+ D+LV + + E +K +
Sbjct: 2744 LIKVWYHEACRVLLDRLVSQKECSWGMTELQKVI 2777
>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 251 QVIEDKLVEDLKSRMPVEEKKKKVAGILKLMEPCDHILEIQFPL 382
QV+ +L++++ + + +EK VA L+ M P D + +Q +
Sbjct: 57 QVLSRELLKNIDTSIAADEKPMIVAVDLQPMAPIDGVCTLQLDI 100
>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 169
Score = 24.6 bits (51), Expect = 6.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 262 FDYLTCSMEKILNHVEKFRVCTGRY 188
F++ SME+ H+EKF+ +Y
Sbjct: 15 FEFKELSMEEAQGHLEKFQEAIAKY 39
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 24.2 bits (50), Expect = 9.1
Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Frame = +2
Query: 32 LHLKNIAKTVVPPLKNCVQNEALNTVLRMTPAGLNIC--CRTYASHEIPE---KLRDIPT 196
L N + + LKNC +++ +T +T + ++C + + +P+ ++R+ +
Sbjct: 644 LKSNNTLRALSQDLKNCAKSKDDSTTQNLTESLGSVCYPSMPFFNQYVPQNPNEVRENIS 703
Query: 197 SANPKFFHMVEYFFHRACQVIEDKLVEDLKSRMPVEEKKKKVAGILKLMEPCDHILEIQF 376
S H H +++ L + E +++ + KL+ +LE+ F
Sbjct: 704 SVMKSRIHAKFESLHSRVELVVKNSYMKLLEQTISEAATDEISDLFKLIHSKPFLLEVGF 763
>SPAC29A4.12c |mug108||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 419 NQESFHNRQNHASMGIES 366
++ SF RQ H SMG+ S
Sbjct: 20 DKHSFSGRQRHPSMGVHS 37
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 136 IQPSRCHSKHRI*GFILNTIF*R 68
I P RC ++R+ G I NT+F R
Sbjct: 569 IGPVRCTLQNRVTGEICNTVFSR 591
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,998
Number of Sequences: 5004
Number of extensions: 42900
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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