Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A11
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196...    32   0.18 
05_03_0483 + 14585581-14587977                                         29   2.2  
04_01_0077 - 873711-874091,874569-874805                               28   2.9  
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369...    28   3.9  
01_06_0125 + 26711157-26713297,26715026-26715206                       27   5.1  
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244...    27   9.0  

>02_05_0888 -
           32517876-32518087,32518320-32518694,32519551-32519638,
           32520145-32520384,32521033-32521149,32521213-32521606,
           32521752-32521998,32522086-32522315,32522768-32522823,
           32522903-32523094,32523274-32523376,32523478-32523544,
           32524312-32525154,32525547-32525670,32525965-32526213,
           32526354-32526443,32526530-32526649,32526664-32526738,
           32527001-32527147,32527255-32527365,32527446-32527667,
           32527777-32527896,32527971-32528270,32528355-32528480,
           32529246-32529360,32529556-32530019,32530119-32530253,
           32530684-32530788,32530876-32531053,32531143-32531864
          Length = 2188

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -3

Query: 442 MSRVLRSITKNHFIIARITPQWELNLKYVITWFHQF*NTS 323
           +S+ + ++ KN      ITP + +N+ YV+T  HQF N+S
Sbjct: 493 LSQYVNAVWKN--FSEGITPNYSINMTYVLTALHQFINSS 530


>05_03_0483 + 14585581-14587977
          Length = 798

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 385 PQWELNLKYVITWFHQF*NTSYFLLFF 305
           P W++NL Y +TW        Y+LL F
Sbjct: 249 PNWQINLNYNLTWILSVDAGFYYLLRF 275


>04_01_0077 - 873711-874091,874569-874805
          Length = 205

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 407 FHNRQNHASMGIESQVCDHMVPSVLEYQLLS 315
           FHN QNH +M I  Q C +   S L+ +LL+
Sbjct: 118 FHNPQNHNAMFI--QACSNKAHSALQAELLA 146


>02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,
            3697214-3698062,3698193-3698337,3698426-3698677,
            3698780-3699089,3699415-3699524
          Length = 962

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 218  HMVEYFFHRACQVIEDKLVEDLKSRMPVEEKKKKVAGILKLMEPCDHILEIQFPLRRDS 394
            H    F   AC ++  KLV+ L     +EE+      +L L+      LE  +PL++D+
Sbjct: 882  HGCNTFQPLACSILATKLVDSLSYDRVLEERVLASLSLLNLVRH-PECLEKLYPLKKDT 939


>01_06_0125 + 26711157-26713297,26715026-26715206
          Length = 773

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 25  RNVAPKEYR---QNGGPTSKKLCSK*SPKYGA*ND 120
           RN++  E R   + GG  SKKL  + SPKYG  N+
Sbjct: 520 RNLSGPELRNLNKGGGELSKKLVVEGSPKYGEKNN 554


>10_08_0655 -
           19621717-19622594,19623186-19623227,19624323-19624479,
           19625333-19625405,19625483-19625595
          Length = 420

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 257 IEDKLVEDLKSRMPVEEKKKKVAGILK 337
           + + ++++LK   P +E KKK+  ILK
Sbjct: 73  MRENVMDELKQMQPEDESKKKMLDILK 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,282,328
Number of Sequences: 37544
Number of extensions: 256065
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)