Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A10
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   167   5e-42
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    48   3e-06
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    48   3e-06
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    36   0.019
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    33   0.18 
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    29   2.2  
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p...    28   3.8  
U64600-4|AAK39201.1|  299|Caenorhabditis elegans C.elegans homeo...    28   5.0  
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    28   5.0  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    27   6.7  
U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam ...    27   8.8  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  167 bits (406), Expect = 5e-42
 Identities = 78/99 (78%), Positives = 87/99 (87%)
 Frame = +3

Query: 249 QFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDSGSPIR 428
           QF++NLPPILN LEV  RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G PI+
Sbjct: 83  QFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIK 142

Query: 429 IPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 545
           IPVG ETLGRI+NVIGEPIDERGPI +   AAIHAEAPE
Sbjct: 143 IPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPE 181


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 21/73 (28%), Positives = 40/73 (54%)
 Frame = +3

Query: 324 VAQHLGENTVRTIAMDGTEGLVRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 503
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 63  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122

Query: 504 PTDKTAAIHAEAP 542
              + + +  +AP
Sbjct: 123 ANARRSRVEVKAP 135


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 21/73 (28%), Positives = 40/73 (54%)
 Frame = +3

Query: 324 VAQHLGENTVRTIAMDGTEGLVRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 503
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 90  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149

Query: 504 PTDKTAAIHAEAP 542
              + + +  +AP
Sbjct: 150 ANARRSRVEVKAP 162


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 336 LGENTVRTIAMDGTEGLVRGQPVHD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 503
           + +N       +GT G+     + + +G  +R PV  + LGRI N  G+PID+  P+
Sbjct: 71  ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPV 127


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 369 DGTEGL-VRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDERGPI-PTD 512
           +GT G+  +      +G   R PV  + LGRI N  G+PID+  P+ P D
Sbjct: 94  EGTTGVDAKFTTCEFTGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPED 143


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 375 TEGLVRGQPVHDSGSPIRIPVGAETLGRIINVIGEPIDE 491
           T G+  G PV  +G P+ + +G   +G I + I  P+ +
Sbjct: 59  TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97


>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
           protein C14B9.8 protein.
          Length = 1226

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 63  MLGAVSRVGSGFLAAKTVAEKTFTECGKIAAVSSVNKRD 179
           ++GA+ ++ +G+L+   V  K  ++  +  AVS +  RD
Sbjct: 599 VIGAIKKINTGYLSGARVVMKDLSDFFRTTAVSKMEFRD 637


>U64600-4|AAK39201.1|  299|Caenorhabditis elegans C.elegans homeobox
           protein 30 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 454 PRVSAPTGIRMGEPESC 404
           PR S+P G RMG P SC
Sbjct: 138 PRASSPGGDRMGSPGSC 154


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 468 VIGEPIDERGPIPTDKTAAIHAEAP 542
           V+G PID +GPI   + + +  +AP
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAP 127


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 320 GGRAALG*KYGPNHCHGRYRGFSART 397
           GGR   G ++GP HC GR+    +R+
Sbjct: 348 GGRHGHGGRHGPPHCPGRHGRHGSRS 373


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 539 SFSVDGSCFISRNRAAFVNRLTDDID-DTA 453
           SFS D S  IS ++  F+ RL DDI+ DT+
Sbjct: 565 SFSADLSVLISSSKMPFLARLFDDIEYDTS 594


>U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam
           protein 3 protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 369 DGTEGLVRGQPVH-DSGSPIRIPVGAETLGRIINVIGEPIDE 491
           D  +G + G+P+  D G  ++ P G E + ++ N  GEP+DE
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDE 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,494,734
Number of Sequences: 27780
Number of extensions: 306894
Number of successful extensions: 867
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)