Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A08
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0229 + 42161770-42164562                                         28   2.4  
08_01_0086 - 629043-629594                                             26   9.9  
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492...    26   9.9  
06_03_1402 - 29906706-29907047,29919049-29919485,29919622-299199...    26   9.9  
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262...    26   9.9  

>01_07_0229 + 42161770-42164562
          Length = 930

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 108 ETVYSVSPKAGCTTRRLYISLSVRRTRKLKS 200
           +T  + SPKA  T R+ Y+S S+R T  LKS
Sbjct: 890 DTSVASSPKAFFTKRQPYLSSSIRYTSFLKS 920


>08_01_0086 - 629043-629594
          Length = 183

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 149 CGTSCFWRNGVHRFRGHNS 93
           CG  C+WR G    RG  +
Sbjct: 134 CGDGCWWRGGAEERRGEGA 152


>07_03_1552 -
           27648193-27648307,27648384-27648431,27649140-27649234,
           27649311-27649376,27649721-27649810,27650210-27650437,
           27650572-27650605,27651106-27651611
          Length = 393

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -1

Query: 220 HDGWFLGLFSFRVLLTDKLIYSLLVVHPA---FGETEYTVSEVIIPRFANFLLLDTAGC 53
           H GW LG  +F +     L+  LLV H     F  T++T   V I  FA    +   GC
Sbjct: 133 HPGWLLGYRAFALAAAVALLVRLLVGHGIDVFFFYTQWTFLLVTI-YFAFATAISAHGC 190


>06_03_1402 -
           29906706-29907047,29919049-29919485,29919622-29919901,
           29921956-29922068,29922290-29922320
          Length = 400

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 257 RTVLLKSRKSFYPTQDKIRRRSHGKSFSKHVR 352
           R  LL +    YPT  K+RR  H +S S  +R
Sbjct: 5   RRFLLAAYGMEYPTTTKVRRLEHHRSVSDSLR 36


>02_01_0365 +
           2621302-2621711,2622442-2622620,2623381-2623496,
           2623626-2623964,2624113-2624307,2624505-2624594,
           2625288-2625518,2625632-2625952
          Length = 626

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 162 ISLSVRRTRKLKSPRNQPSWLSK*AVNRMEALVQSC*KAGNHSTPLRTRSG 314
           IS+S R TR+  +PR   S   +    R  A +  C +  +HS+PL+ R G
Sbjct: 28  ISVSKRATRQ-NTPRKPDSPPKR--TTRSSANLAKCIENKHHSSPLKRRRG 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,510,658
Number of Sequences: 37544
Number of extensions: 222340
Number of successful extensions: 479
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)