Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A07
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    26   2.1  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   3.6  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.8  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    24   6.3  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    24   8.3  

>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 125 GSNFTLSCFRPEHLSQ*P 72
           G+NF+ SC+ PE L Q P
Sbjct: 401 GTNFSPSCYSPESLMQQP 418


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 244 EEKGHHGNNPLNTNASQEW 188
           EE G + ++PLNT+   +W
Sbjct: 88  EESGENSDHPLNTSDDSKW 106


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 183 YFFIYHELVRKFSSFSQFARLEFHIELFS 97
           +F +YH+++   S F     + FH   FS
Sbjct: 157 FFLLYHQIILSHSLFHISHLISFHFLFFS 185


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 97  RKQLNVKFEPGELREAAKLSNKLVVNKEV 183
           R+Q+ +KF+  E R  A+++  L + K +
Sbjct: 399 RRQIKLKFKQEERRNPARVNQALKIKKPI 427


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 174 IYHELVRKFSSFSQFARLEFHI 109
           +Y  L   F+ F Q+A L+FHI
Sbjct: 690 VYAFLNLFFAKFPQYAHLDFHI 711


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,217,650
Number of Sequences: 5004
Number of extensions: 18271
Number of successful extensions: 38
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)