Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A07
         (363 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0244 + 1786009-1788048                                           27   3.4  
03_01_0585 - 4331111-4331850,4331960-4332224                           27   3.4  
01_05_0490 + 22672241-22674679                                         27   4.5  
11_01_0066 - 536281-537196,537397-537452                               27   6.0  

>07_01_0244 + 1786009-1788048
          Length = 679

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = +2

Query: 5   NSWSSPGGG--V*TMDPRAEEF 64
           ++W++ GGG  V TMDPR EE+
Sbjct: 583 DAWAAGGGGSVVDTMDPRLEEY 604


>03_01_0585 - 4331111-4331850,4331960-4332224
          Length = 334

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 9  AGAHRVAASKLWIPGLRNSARG 74
          A   RV AS LW  G +N+ARG
Sbjct: 19 AATKRVTASHLWPAGSKNAARG 40


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 24  VAASKLWIPGLRNSARGSLRKMLWPKTTQCEIRAWRTERSC*TFEQAR 167
           +A S+ W P + ++A    +  L P  T    R W +ER     E+ R
Sbjct: 408 LARSRTWNPEMLDAALEQQQDTLMPPPTLTRSRRWNSERLDAVLEEMR 455


>11_01_0066 - 536281-537196,537397-537452
          Length = 323

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 129 ARLEFHIELFSARASFSMTLVPNSSARGSIV*TPPPGELQL 7
           A + F    F   A FS +   ++  RGS V  P PG++++
Sbjct: 34  ASIPFETFTFHVDADFSSSSASSADHRGSSVLPPGPGDIEV 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,867,289
Number of Sequences: 37544
Number of extensions: 136279
Number of successful extensions: 257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)