Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A05
(456 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53148-5|AAB37076.1| 130|Caenorhabditis elegans Ribosomal prote... 80 7e-16
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 31 0.40
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 29 1.2
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 29 1.2
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 29 1.2
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 29 1.2
U97003-4|AAB52268.2| 370|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical ... 27 4.9
Z81043-4|CAB02798.1| 179|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z83226-4|CAI79261.2| 206|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z70212-8|CAB54284.1| 320|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z66519-6|CAA91374.3| 394|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF000194-3|AAK39379.1| 191|Caenorhabditis elegans Hypothetical ... 27 8.6
>U53148-5|AAB37076.1| 130|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 30 protein.
Length = 130
Score = 80.2 bits (189), Expect = 7e-16
Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Frame = +3
Query: 42 MQLHIRG--QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSEL- 212
MQ+ + G +TH LDV+ ++ IK + EE ++S L + + E
Sbjct: 1 MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISYGSKVLSEELTLGECQ 55
Query: 213 --SSTELDLTVPLLGGKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXIQYNRRFVN 386
S + L + LLGGKVHGSLARAGKV+ QTP +QY RR+VN
Sbjct: 56 IESLSTLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVN 115
Query: 387 VVQTFGRRRGPNSNS 431
V G++RGPNSNS
Sbjct: 116 VASGPGKKRGPNSNS 130
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 31.1 bits (67), Expect = 0.40
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 3 RGGCQSFLIRRYKMQLHIRGQS-THVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGA 179
R C++ + + Q+ ++ ++ ++ ++++ DIKN + D+ LS G
Sbjct: 141 RKNCENRAAPKPEFQIFVKVLGVSYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGK 200
Query: 180 PLEDSCLVSE 209
LED C + +
Sbjct: 201 RLEDHCSIGD 210
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 105 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 281
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 528 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 587
Query: 282 GKV 290
V
Sbjct: 588 ASV 590
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 105 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 281
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785
Query: 282 GKV 290
V
Sbjct: 786 ASV 788
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 105 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 281
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 794 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 853
Query: 282 GKV 290
V
Sbjct: 854 ASV 856
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 105 GDIKNRLRLLADVESEEVTLSMCGAPLEDSCLVSELSSTEL-DLTVPLLGGKVHGSLARA 281
G ++ + L A++ES + + + D+ +++ L L +L PL+ ++HG L A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785
Query: 282 GKV 290
V
Sbjct: 786 ASV 788
>U97003-4|AAB52268.2| 370|Caenorhabditis elegans Hypothetical
protein F47C10.3 protein.
Length = 370
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 167 RQSHLLTLNISKKPEAILDITDGFLTIHVKDV--RRLTSNVKLHFVSSYQERLTT 9
R+ L TL ++ AIL+ TD +T KDV RL L F+++ + RL T
Sbjct: 209 REFSLKTLVLNSAMRAILNKTDRVMTPDGKDVYPDRLLQMFSLDFLNNIRSRLAT 263
>AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical
protein F37C4.2 protein.
Length = 686
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 361 ILRLARPVLFFFFCCFSTLGVWPLTLPA 278
IL+ ++PV +F + V+P TLPA
Sbjct: 257 ILKFSQPVSYFALVILLAINVFPFTLPA 284
>Z81043-4|CAB02798.1| 179|Caenorhabditis elegans Hypothetical
protein C29F3.5 protein.
Length = 179
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 340 VLFFFFCCFSTLGVWPLTLPARARDPCTLP 251
++F FFC FS G P+T P +P +P
Sbjct: 6 IIFAFFCMFSVEGCIPMTPP---EEPVVVP 32
>Z83226-4|CAI79261.2| 206|Caenorhabditis elegans Hypothetical
protein F43D2.6 protein.
Length = 206
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 385 FTNLLLYWILRLARPVLFFFFCCFSTLGVW 296
+T L++ ++ + VL FFCC G W
Sbjct: 87 YTMLIIGLLVSIVLSVLLSFFCCLLCNGCW 116
>Z70212-8|CAB54284.1| 320|Caenorhabditis elegans Hypothetical
protein R04D3.12 protein.
Length = 320
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 394 WTTFTNLLLYWILRLARPVLFFFF 323
W +NL++Y LA PV+ FF+
Sbjct: 190 WPNTSNLVIYGACLLASPVICFFY 213
>Z66519-6|CAA91374.3| 394|Caenorhabditis elegans Hypothetical
protein B0334.6 protein.
Length = 394
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 364 WILRLARPVLFFFFCCFSTLGVWPLTLPARA 272
W L +A V F F+TL V PL++P+ A
Sbjct: 79 WNLLIALAVCDSLFLIFATLDVTPLSIPSLA 109
>AF000194-3|AAK39379.1| 191|Caenorhabditis elegans Hypothetical
protein ZC328.5 protein.
Length = 191
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 283 PARARDPCTLPPRRGTVRSSSVDES 209
P RA+ P T PP TV SS+ +S
Sbjct: 24 PCRAKRPTTEPPSTTTVESSTTRDS 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,928,470
Number of Sequences: 27780
Number of extensions: 179381
Number of successful extensions: 580
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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