Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A04
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   155   2e-39
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   155   2e-39
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    29   0.46 
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr...    25   5.7  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   7.5  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   7.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   7.5  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  155 bits (377), Expect = 2e-39
 Identities = 70/128 (54%), Positives = 86/128 (67%)
 Frame = +3

Query: 60  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDNDKYNTPKYRLIVRLSNKDV 239
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q  +KYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
           TCQ+  SR+ GD+++  A+S ELPRYGIK GL N+ AAY TG                Y 
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 420 GATEVTGD 443
           G TE  G+
Sbjct: 121 GVTEPEGE 128


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  155 bits (377), Expect = 2e-39
 Identities = 70/128 (54%), Positives = 86/128 (67%)
 Frame = +3

Query: 60  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDNDKYNTPKYRLIVRLSNKDV 239
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q  +KYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
           TCQ+  SR+ GD+++  A+S ELPRYGIK GL N+ AAY TG                Y 
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120

Query: 420 GATEVTGD 443
           G TE  G+
Sbjct: 121 GVTEPEGE 128


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +3

Query: 111 VKFKRRREGKTDYYARKRLVVQDNDKYNTPKYRLIVRLS 227
           VK K R +G+  +YA K+LV+  +DK N+   R ++ LS
Sbjct: 571 VKVKNRIDGR--FYAVKKLVLLSDDKENSRILREVMTLS 607


>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 225 ITVQSVGTLECCICHYPGQRGVCEHSSQFFPHDAS 121
           I +     L C  C +P  +G+C+  S   P D++
Sbjct: 62  IKIGDYAFLYCSNCKFPHIKGLCQICSNSHPDDSA 96


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +3

Query: 228 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAA 350
           N+D      + +   D  VC +++  +  YG + G  +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 108 QVKFKRRREGKTDYYARKRLVVQD--NDKYNTPK-YRLIVRLSNKDVTCQ 248
           Q+K K+ ++ K+    RKRLV  D  N+  N P  + L    SN D++ +
Sbjct: 285 QIKIKKSKKKKSKSDRRKRLVELDAENENENDPSDFVLPNGQSNSDLSVE 334


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 463 TGSTLYSSPVTSVAPV*RLSKPSLCNNLLASNRPVQ 356
           TGS   SS V S      +SKPS  N L    +P+Q
Sbjct: 338 TGSDKLSSHVQSETENAPVSKPSKPNTLTEDEKPLQ 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,645
Number of Sequences: 5004
Number of extensions: 38367
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)