Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A04
(465 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 225 4e-59
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 223 2e-58
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 223 2e-58
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 223 2e-58
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 223 2e-58
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 223 2e-58
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 221 1e-57
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 187 1e-47
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 124 2e-28
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 225 bits (551), Expect = 4e-59
Identities = 99/139 (71%), Positives = 116/139 (83%)
Frame = +3
Query: 48 IF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDNDKYNTPKYRLIVRLS 227
+F +MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QD +KYNTPKYR+IVR++
Sbjct: 4 LFRRMGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVT 63
Query: 228 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXD 407
N+D+ CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG D
Sbjct: 64 NRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMD 123
Query: 408 SLYTGATEVTGDEYNVEPV 464
+Y G EVTGDEYNVE +
Sbjct: 124 KIYEGQVEVTGDEYNVESI 142
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 223 bits (545), Expect = 2e-58
Identities = 98/135 (72%), Positives = 113/135 (83%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDNDKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QD +KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 420 GATEVTGDEYNVEPV 464
G EVTGDEYNVE +
Sbjct: 121 GQVEVTGDEYNVESI 135
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 223 bits (545), Expect = 2e-58
Identities = 98/135 (72%), Positives = 113/135 (83%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDNDKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QD +KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 420 GATEVTGDEYNVEPV 464
G EVTGDEYNVE +
Sbjct: 121 GQVEVTGDEYNVESI 135
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 223 bits (545), Expect = 2e-58
Identities = 98/135 (72%), Positives = 113/135 (83%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDNDKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QD +KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 420 GATEVTGDEYNVEPV 464
G EVTGDEYNVE +
Sbjct: 121 GQVEVTGDEYNVESI 135
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 223 bits (545), Expect = 2e-58
Identities = 98/135 (72%), Positives = 113/135 (83%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDNDKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QD +KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 420 GATEVTGDEYNVEPV 464
G EVTGDEYNVE +
Sbjct: 121 GQVEVTGDEYNVESI 135
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 223 bits (545), Expect = 2e-58
Identities = 98/135 (72%), Positives = 113/135 (83%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDNDKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QD +KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 420 GATEVTGDEYNVEPV 464
G EVTGDEYNVE +
Sbjct: 121 GQVEVTGDEYNVESI 135
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 221 bits (540), Expect = 1e-57
Identities = 97/135 (71%), Positives = 112/135 (82%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDNDKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QD +KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYT 419
CQ+AY+RIEGD IVCA Y+HELP+YG+KVGLTNYAAAYCTG D +Y
Sbjct: 61 ICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120
Query: 420 GATEVTGDEYNVEPV 464
G EVTGDEYNVE +
Sbjct: 121 GQVEVTGDEYNVESI 135
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 187 bits (456), Expect = 1e-47
Identities = 81/98 (82%), Positives = 94/98 (95%)
Frame = +3
Query: 60 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDNDKYNTPKYRLIVRLSNKDV 239
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QD +KYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 240 TCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAA 353
CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAA
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAA 98
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 124 bits (299), Expect = 2e-28
Identities = 53/85 (62%), Positives = 65/85 (76%)
Frame = +3
Query: 210 LIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXX 389
+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YG+KVGLTNYAAAYCTG
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 60
Query: 390 XXXXXDSLYTGATEVTGDEYNVEPV 464
D +Y G EVTGDEYNVE +
Sbjct: 61 NRFGMDKIYEGQVEVTGDEYNVESI 85
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,478,993
Number of Sequences: 237096
Number of extensions: 1430858
Number of successful extensions: 3036
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3036
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3986009860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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