Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A04
(465 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 25 0.53
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 25 0.53
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 24 0.93
AY526236-1|AAS20469.1| 85|Apis mellifera epoxide hydrolase pro... 24 0.93
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 23 2.1
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 2.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 4.9
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 21 4.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 4.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 4.9
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 4.9
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 4.9
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 6.5
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 8.6
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 24.6 bits (51), Expect = 0.53
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +3
Query: 81 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDNDKYNTPKY 206
KN++ +++Y+ K R +T+ K + ++ YN Y
Sbjct: 273 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 314
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.6 bits (51), Expect = 0.53
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +3
Query: 81 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDNDKYNTPKY 206
KN++ +++Y+ K R +T+ K + ++ YN Y
Sbjct: 284 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 325
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 23.8 bits (49), Expect = 0.93
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 223 NRTISRYFGVLYLSLSWTTRRLRA**SVFPSRRLLNLTW 107
N Y ++L+ SW RLR ++ R+L++ W
Sbjct: 45 NEESMTYVADIFLAQSWRDSRLRLPENMSEDYRILDVDW 83
>AY526236-1|AAS20469.1| 85|Apis mellifera epoxide hydrolase
protein.
Length = 85
Score = 23.8 bits (49), Expect = 0.93
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 264 CVSMQLDR*HLYWITVQSVGTLECCICHYPGQRGVCEHSSQFFP 133
C S+ L +L+W+ V GT ++P G EH S+FFP
Sbjct: 29 CTSLNLS--NLFWLFV---GT------YFPSLIGANEHYSKFFP 61
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 22.6 bits (46), Expect = 2.1
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 141 TDYYARKRLVVQDNDKYNTPKYRLIVRLSNKDVTCQVAY 257
TD RK ++ ++ K ++ ++V + N+D +AY
Sbjct: 288 TDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDCGSAIAY 326
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 2.1
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = -1
Query: 189 ICHYPGQRGVCEHSSQFFPH 130
+C +PG +CE F H
Sbjct: 282 VCKWPGCEVICEDYQAFLKH 301
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.4 bits (43), Expect = 4.9
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = -3
Query: 205 YFGVLYLSLSWTTRRLRA**SVFPSRRLLNLTWYR 101
Y ++ + +W RLR ++ RLL + W +
Sbjct: 82 YAADIFFAQTWKDNRLRLPENMTSEYRLLEVDWLK 116
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 373 CLLRMSRPGKKITKKTILG 391
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 4.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 350 CLLHWSVAGKKIVAEARLG 406
CLL S GKKI + LG
Sbjct: 373 CLLRMSRPGKKITKKTILG 391
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 4.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 126 RREGKTDYYARKRLVVQDNDKYNTPKYRLIVRLSNKD 236
R + KT YY +D++++ TPK R R ++K+
Sbjct: 382 RGKEKTCYYPYHPSTQEDSEEHLTPK-RFHSRAASKE 417
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 4.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 126 RREGKTDYYARKRLVVQDNDKYNTPKYRLIVRLSNKD 236
R + KT YY +D++++ TPK R R ++K+
Sbjct: 382 RGKEKTCYYPYHPSTQEDSEEHLTPK-RFHSRAASKE 417
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.0 bits (42), Expect = 6.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +3
Query: 72 KVVKNKQYFKRYQVKFKRRREGKTD 146
K KN+ +++Y+ K R KT+
Sbjct: 286 KSYKNENSYRKYRETSKERSRDKTE 310
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 20.6 bits (41), Expect = 8.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 218 YNQSVLWSVVFVIILDNEAF 159
Y SV W ++ V + NEAF
Sbjct: 196 YYISVEWDIIKVPAVRNEAF 215
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,812
Number of Sequences: 438
Number of extensions: 2510
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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