Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A03
         (331 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   2.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   2.2  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    24   5.2  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    24   6.8  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    24   6.8  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    24   6.8  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    23   9.0  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    23   9.0  

>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 250 IHRVLIALDSVNNIFATHPAAL*DIIRLLPVEPSL 146
           + +VLI L    ++F  HP     I++ +  +PSL
Sbjct: 427 LSKVLIPLHQTKSVFLYHPQLTYCIVQFIDKDPSL 461


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 107 SSVAPTQGHAPDLHGARPSLP 45
           SS AP  GHAP++    P  P
Sbjct: 219 SSFAPPAGHAPNVTSESPKFP 239


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 200 TSGGAVRYYPPTSGGALSHLPNVRSHGMTI*SSVAPTQGHAPDLHGARPS 51
           TS  A     PT   A+S  PNV +   ++ S+ A  Q ++P  H   P+
Sbjct: 87  TSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAAPQLNSPS-HSYEPT 135


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 196 DVWRKYC*HYLK 231
           DV RKYC HY K
Sbjct: 359 DVTRKYCLHYYK 370


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -1

Query: 325 KYFWCN*QRHVCEQTVEALKLLISTIHRVLIALDSV--NNIFA 203
           KY   N ++H+ + TVE+L L++    + L+ L++V   N+FA
Sbjct: 491 KYDPVNPEKHITKVTVESLYLMMG---QELVYLETVPAGNVFA 530


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 189 RCKILSAYFRWSPLSSAKCQIAWNDY 112
           +C IL  +  + P+SS K ++ + DY
Sbjct: 298 KCPILILFGEFDPVSSLKDKVFFQDY 323


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 63  TMEVWRVSLCRRYRALYSHSMRSDI--WQMREGSTGSR 170
           ++E+W  + C++ R +  H+ R     W     S+G R
Sbjct: 314 SVEIWDAATCKKTRTMSGHTERVGALSWNDHVLSSGGR 351


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -2

Query: 156 SPLSSAKCQIAWNDYIKLCSADTGTRA 76
           +P+++A  Q AWND+ ++  A++   +
Sbjct: 277 TPVTNASEQQAWNDFDEILHANSSVHS 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,757
Number of Sequences: 5004
Number of extensions: 24571
Number of successful extensions: 60
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)