Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A03
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411... 33 0.072
01_07_0350 + 42941976-42942401,42942510-42942737,42943201-429433... 29 0.89
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078... 29 1.2
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 29 1.2
04_04_1478 - 33882625-33883639,33883725-33883849,33883935-338841... 28 1.5
04_04_1352 - 32831688-32831957 27 2.7
03_06_0545 - 34643303-34643416,34643442-34643656,34643968-34644070 27 2.7
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 27 4.7
01_06_0559 + 30235379-30235584,30235679-30235814,30235885-30235938 26 6.2
01_01_0986 + 7791032-7791124,7791484-7791633,7791782-7791874,779... 26 6.2
07_01_0275 - 2023651-2023755,2025324-2025452,2025555-2025625,202... 26 8.3
05_01_0371 - 2910771-2911226,2911804-2912067,2912185-2912226 26 8.3
02_03_0193 + 16211395-16212729,16212894-16213401,16213712-16214112 26 8.3
01_01_0099 - 751627-752126,752866-753056,753188-753945 26 8.3
>01_06_1342 -
36438869-36439459,36439567-36439627,36440751-36441130,
36441955-36442761
Length = 612
Score = 32.7 bits (71), Expect = 0.072
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -3
Query: 206 RHTSGGAVRYYPPTSGGALSHLPNVRSHGMTI*SSVAPTQGHAPDLHGARPSLPAQQQQE 27
+H +G AV +GG + H+P H P G +P HG QQQQ+
Sbjct: 38 QHVAGAAVAAAAAAAGGQMYHVPQ---HSRREKLRFPPDAGDSPPPHGHGHGHAPQQQQQ 94
Query: 26 H 24
H
Sbjct: 95 H 95
>01_07_0350 +
42941976-42942401,42942510-42942737,42943201-42943380,
42943515-42943730,42943854-42943955,42944377-42944439,
42944526-42944594,42945662-42945730,42947003-42947069,
42947449-42947514,42947600-42947697,42947820-42947857,
42947929-42948016,42948101-42948373,42948470-42948535,
42948624-42948779
Length = 734
Score = 29.1 bits (62), Expect = 0.89
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 66 MEVWRVSLCRRYRALYSHSMRSDI--WQMREGSTGSR 170
+++W S C+R R + H R+ + W R S+GSR
Sbjct: 217 VQIWDSSRCKRIRNMGGHQTRTGVLAWSSRILSSGSR 253
>06_02_0187 +
12805788-12807007,12807059-12807186,12807811-12807859,
12808508-12808853
Length = 580
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 170 PTSGGALSHLPNVRSHGMTI*SSVAPTQGHAPDLHGARPSLPAQQQQ 30
PTSG A+S L + T ++V T A RP+LPA+Q++
Sbjct: 73 PTSGIAVSFLSTAAATNSTDTATVPTTTAAARVAATTRPTLPARQRE 119
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 66 MEVWRVSLCRRYRALYSHSMR--SDIWQMREGSTGSR 170
++VW + C+R R + SH MR + W S+GSR
Sbjct: 263 VQVWDATRCKRIRTMESHRMRVGALAWNSSLLSSGSR 299
>04_04_1478 -
33882625-33883639,33883725-33883849,33883935-33884144,
33884645-33884650
Length = 451
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 191 GAVRYYPPTSGGALSHLPNVRSHGMTI*SSVAPTQGHAPDLHGARPSLP 45
G VR+ S ++ L ++ +T SS AP H HG P+LP
Sbjct: 243 GPVRHEQSASSSVVAPLVSIPPPQITA-SSPAPFSDHVGTFHGMNPTLP 290
>04_04_1352 - 32831688-32831957
Length = 89
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 22 LCSCCC*AGRDGLAPWRSGACPCVGATELYIVIPCDLTFG 141
L S CC A DGLA + AC C E + IP + T G
Sbjct: 32 LGSKCC-ALVDGLAAAEAAACFCTTIKESVLGIPTEWTVG 70
>03_06_0545 - 34643303-34643416,34643442-34643656,34643968-34644070
Length = 143
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +1
Query: 55 GLAPWRSGACPCVGATELYIV---IPCDLTFGR 144
G APW SG C C L + PC +TFGR
Sbjct: 17 GSAPWSSGLCDCFDDYGLCCMTWWCPC-ITFGR 48
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = -3
Query: 149 SHLPNVRSHGMTI*SSVAPTQGH----APDLHGARP-SLPAQQQQEHKMVI 12
+H P VRS G+ + VAP H P + RP SLP ++++ + +I
Sbjct: 43 THFPAVRSFGLRLALVVAPAPRHRRKQRPLHYACRPTSLPCRRRRRLRSII 93
>01_06_0559 + 30235379-30235584,30235679-30235814,30235885-30235938
Length = 131
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 186 SAAGCVAKILLTLSKAINTL*IVEINSF 269
SAA C+A++LLT KA+ +V+ ++
Sbjct: 78 SAAYCLAQLLLTAHKAVKNAPVVQSRNY 105
>01_01_0986 +
7791032-7791124,7791484-7791633,7791782-7791874,
7792440-7792474,7792544-7793009,7793085-7793312,
7793387-7793446
Length = 374
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 185 VRYYPPTSGGALSHLPNVRSHGM 117
+R YPP S GAL LP HG+
Sbjct: 69 LRTYPPQSDGALC-LPTTSDHGL 90
>07_01_0275 -
2023651-2023755,2025324-2025452,2025555-2025625,
2025717-2025803,2026000-2026494,2026588-2026813
Length = 370
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 212 YFRHTSGGAVRYYPPTSGGALSHLPNVRSH 123
Y+ H +GGA + T GA S PN+ H
Sbjct: 81 YYYHHTGGARPQWAATKTGAPSTPPNMMMH 110
>05_01_0371 - 2910771-2911226,2911804-2912067,2912185-2912226
Length = 253
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -2
Query: 168 YFRWSPLSSAKCQIAWNDYIKLCSADTGTRARPPWC*AVSTRSTTARAQDG 16
Y R+ P++ K AW +L + TRA P ++S R TA A DG
Sbjct: 160 YTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVA-DG 209
>02_03_0193 + 16211395-16212729,16212894-16213401,16213712-16214112
Length = 747
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -2
Query: 153 PLSSAKCQIAWNDYIKLCSADTGTRARPPWC*AV 52
P+ S++C++ ++D++ + PPW AV
Sbjct: 357 PVVSSECEVRYDDFVSGADFTARPQVVPPWRLAV 390
>01_01_0099 - 751627-752126,752866-753056,753188-753945
Length = 482
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 108 LYSHSMRSDIWQMREGSTGSRRIISYSAAGCVAKIL 215
++SH MR ++ E + G R I+Y GC +IL
Sbjct: 402 IFSHDMRFSWDKLNEIALGIARGINYLHQGCEMQIL 437
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,696,842
Number of Sequences: 37544
Number of extensions: 192886
Number of successful extensions: 463
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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