Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A03
(331 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-11|AAK31456.1| 947|Caenorhabditis elegans Hypothetical p... 29 0.79
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 29 0.79
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 29 0.79
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 27 3.2
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ... 27 3.2
Z68882-17|CAI79150.1| 111|Caenorhabditis elegans Hypothetical p... 26 5.5
Z81125-6|CAI79225.1| 234|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z81125-5|CAB03381.2| 398|Caenorhabditis elegans Hypothetical pr... 26 7.3
AF408760-1|AAO27839.1| 318|Caenorhabditis elegans unknown prote... 26 7.3
Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 25 9.7
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 25 9.7
AF039716-7|AAB96735.3| 617|Caenorhabditis elegans Sodium:neurot... 25 9.7
>U29535-11|AAK31456.1| 947|Caenorhabditis elegans Hypothetical
protein C25H3.11 protein.
Length = 947
Score = 29.1 bits (62), Expect = 0.79
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 107 SSVAPTQGHAPDLHGARPSLPAQQQQEHKMVIIPI 3
S + PDLH S+PA+Q + H+ IPI
Sbjct: 838 SQMKSISNSCPDLHKTEKSVPARQSKSHQNHHIPI 872
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-mediated
mRNA decay trans-acting factor protein.
Length = 1069
Score = 29.1 bits (62), Expect = 0.79
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 166 VGG*YLTAPPDVWRKYC*HYLKRSILYELSKSIALKPLQSARTHDVVNYTRNI 324
VG + A D+W + HY + +LYE ALKPL A + NI
Sbjct: 847 VGNAKVLARHDLWHELINHYKSKEMLYE-GPINALKPLNLALPKATIRTKNNI 898
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 29.1 bits (62), Expect = 0.79
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 166 VGG*YLTAPPDVWRKYC*HYLKRSILYELSKSIALKPLQSARTHDVVNYTRNI 324
VG + A D+W + HY + +LYE ALKPL A + NI
Sbjct: 847 VGNAKVLARHDLWHELINHYKSKEMLYE-GPINALKPLNLALPKATIRTKNNI 898
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 286 QTVEALKLLISTIHRVLIALDSVNNIFATHPAAL*DIIRLLPVE-PSLICQMSDR 125
QT+E+LKLLI +IAL+ ++ ++ D+ LL + P + + +R
Sbjct: 589 QTIESLKLLIKGKTPFVIALNKIDRLYEYESNPRKDVYELLKSQKPRVQAEFKER 643
>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
protein F56H1.5 protein.
Length = 1015
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 54 RPSTMEVWRVSLCRRYRALYSHSMRSDIWQMREGSTGSRRI 176
R S + + C + +LYS M+ ++ M E + G RR+
Sbjct: 635 RKSVKYTFEIVNCLKSTSLYSQGMQPVMYSMMESANGWRRV 675
>Z68882-17|CAI79150.1| 111|Caenorhabditis elegans Hypothetical
protein C47E12.14 protein.
Length = 111
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 99 YRALYSHSMRSDIWQMRE 152
+RA + ++ +SD+W+MRE
Sbjct: 31 FRASFPYANKSDVWKMRE 48
>Z81125-6|CAI79225.1| 234|Caenorhabditis elegans Hypothetical
protein T22A3.3b protein.
Length = 234
Score = 25.8 bits (54), Expect = 7.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 156 SPLSSAKCQIAWNDYIKLC 100
SP + +C W Y+KLC
Sbjct: 159 SPGTWVRCHYCWESYVKLC 177
>Z81125-5|CAB03381.2| 398|Caenorhabditis elegans Hypothetical
protein T22A3.3a protein.
Length = 398
Score = 25.8 bits (54), Expect = 7.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 156 SPLSSAKCQIAWNDYIKLC 100
SP + +C W Y+KLC
Sbjct: 323 SPGTWVRCHYCWESYVKLC 341
>AF408760-1|AAO27839.1| 318|Caenorhabditis elegans unknown protein
protein.
Length = 318
Score = 25.8 bits (54), Expect = 7.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 156 SPLSSAKCQIAWNDYIKLC 100
SP + +C W Y+KLC
Sbjct: 243 SPGTWVRCHYCWESYVKLC 261
>Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical
protein F53B6.2b protein.
Length = 711
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 123 WNDYIKLCSADTGTRARPPWC*AVSTRSTTARAQD 19
W + + C D+G R R WC +R T R D
Sbjct: 248 WTECSRSC--DSGERRRQVWCEIRDSRGKTQRRPD 280
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 123 WNDYIKLCSADTGTRARPPWC*AVSTRSTTARAQD 19
W + + C D+G R R WC +R T R D
Sbjct: 582 WTECSRSC--DSGERRRQVWCEIRDSRGKTQRRPD 614
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 106 LYIVIPCDLTFGR*ERAPP 162
+++++P LTFG +RAPP
Sbjct: 754 VFLLVPPTLTFGDHQRAPP 772
>AF039716-7|AAB96735.3| 617|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 1
protein.
Length = 617
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 13 ITILCSCCC*AGRD 54
+TILC+CCC G+D
Sbjct: 551 MTILCACCC-KGKD 563
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,812,618
Number of Sequences: 27780
Number of extensions: 148121
Number of successful extensions: 332
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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