Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0014_A03
         (331 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   8.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   8.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   8.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   8.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   8.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   8.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 214 C*HYLKRSILYELSKSIALKPLQSARTHDVV 306
           C H        EL K     P++ A+T DV+
Sbjct: 435 CTHTTTNGCTAELRKKEPPHPIRVAKTIDVI 465


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 214 C*HYLKRSILYELSKSIALKPLQSARTHDVV 306
           C H        EL K     P++ A+T DV+
Sbjct: 421 CTHTTTNGCTAELRKKEPPHPIRVAKTIDVI 451


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 214 C*HYLKRSILYELSKSIALKPLQSARTHDVV 306
           C H        EL K     P++ A+T DV+
Sbjct: 455 CTHTTTNGCTAELRKKEPPHPIRVAKTIDVI 485


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 214 C*HYLKRSILYELSKSIALKPLQSARTHDVV 306
           C H        EL K     P++ A+T DV+
Sbjct: 404 CTHTTTNGCTAELRKKEPPHPIRVAKTIDVI 434


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 301 RHVCEQTVEALKLL 260
           +HV E+T +AL+L+
Sbjct: 20  QHVLEETQQALELI 33


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 34  CC*AGRDGLAPW 69
           CC A  DGL P+
Sbjct: 446 CCFAQDDGLCPY 457


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 47   PAQQQQEHKMVIIP 6
            P+QQQ + + +I+P
Sbjct: 1231 PSQQQTQQQPIILP 1244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,919
Number of Sequences: 438
Number of extensions: 1994
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)