Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A02
(344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 137 2e-33
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 29 1.3
11_01_0645 + 5185341-5185568,5185773-5185823 27 3.0
09_04_0491 + 18043087-18043548 27 3.0
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 27 3.9
03_03_0116 - 14572258-14572881,14573026-14573127,14573253-145733... 26 6.9
07_03_0005 - 12265405-12265599,12266073-12266190,12266867-122669... 26 9.1
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139... 26 9.1
05_01_0397 - 3129679-3130144,3130655-3131104,3132215-3132273,313... 26 9.1
03_01_0548 + 4099386-4099847,4100435-4101316 26 9.1
03_01_0547 + 4093196-4093657,4094267-4095148 26 9.1
03_01_0544 + 4082528-4082989,4083585-4084466 26 9.1
03_01_0543 + 4076981-4077442,4078145-4079026 26 9.1
>03_04_0129 +
17520753-17520842,17521651-17521741,17521887-17522070,
17522149-17522224
Length = 146
Score = 137 bits (332), Expect = 2e-33
Identities = 60/104 (57%), Positives = 79/104 (75%)
Frame = +2
Query: 32 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 211
TVKDV + VK +AHLK+ GK+++P+ +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8 TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67
Query: 212 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALE 343
Y+R +GV KI+GGR+RNG P HFC+SSG+I+R LQ L+
Sbjct: 68 YLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQ 111
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 7 GTRQDAFRYSEGC*TRQNRQNCSRSLEKDRQSEGSRSYGLGKDSSFQGT 153
G +Q A+ YS T+ +Q S+ D+Q G+ YG +S+ G+
Sbjct: 506 GGQQQAYDYSSYYQTQGQQQGYSQQTGYDQQGYGTSGYGSAANSTQDGS 554
>11_01_0645 + 5185341-5185568,5185773-5185823
Length = 92
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 209 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 325
++ +SP + + + GR+R G P R +G IA +
Sbjct: 18 VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56
>09_04_0491 + 18043087-18043548
Length = 153
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 2 HEAQGKMRSVTVKDVEQDKI-VKTVAAHLKKIGKVKVPD 115
H+ G R KD EQD+I K ++ KK+GK+K D
Sbjct: 95 HQMNGGNRHQHAKD-EQDEIPTKLSTSYSKKVGKIKKGD 132
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 133 LYQVHMIW--NLHFADLFQVSGYSFDDFV 53
L +H +W ++ FAD+ +S +FD+FV
Sbjct: 362 LASLHQVWKFSITFADVLGLSSVTFDEFV 390
>03_03_0116 -
14572258-14572881,14573026-14573127,14573253-14573345,
14573445-14573591,14573690-14573780,14573873-14573961,
14574061-14574126,14574241-14574762
Length = 577
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 82 LEKDRQSEGSRSYGLGKDSSFQGT 153
LE+ +G RSY LGK SF+ T
Sbjct: 475 LERINSKKGMRSYQLGKQLSFRWT 498
>07_03_0005 -
12265405-12265599,12266073-12266190,12266867-12266952,
12268056-12268156,12268212-12268323
Length = 203
Score = 25.8 bits (54), Expect = 9.1
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 164 HRE-PVP*NELSLPSPYDLEPSLCRSFS-SERLQF*RFCLVQHPS 36
HR+ PVP + +L D + R + S R+ F R C V HPS
Sbjct: 44 HRDLPVPVTKTTLSQAVDAFAAAGRGANTSSRILFSRVCRVGHPS 88
>06_03_1501 +
30612643-30613310,30613396-30613501,30613732-30613934,
30614211-30614502
Length = 422
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 340 KSLESFTSNTAR*SAEVRGCDTIA 269
KS+ESF + R EVR CD ++
Sbjct: 358 KSVESFVESQRRAGHEVRACDFVS 381
>05_01_0397 -
3129679-3130144,3130655-3131104,3132215-3132273,
3133136-3133305,3134655-3134771,3134980-3135166
Length = 482
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 224 PVGVKTVTKIFGGRKRNG--VTPSHFCRSSGSIAR 322
P G ++ G +R G ++PS+F SGS +R
Sbjct: 300 PFGTTRAARVDGDTQRRGSSISPSYFSNGSGSRSR 334
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 25.8 bits (54), Expect = 9.1
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 17 KMRSVTVK--DVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFK 148
KM + T K D+IVK V+++LKK+G PD + V + F+
Sbjct: 154 KMDATTPKYSKARYDEIVKEVSSYLKKVG--YNPDKIPFVPISGFE 197
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 25.8 bits (54), Expect = 9.1
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 17 KMRSVTVK--DVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFK 148
KM + T K D+IVK V+++LKK+G PD + V + F+
Sbjct: 154 KMDATTPKYSKARYDEIVKEVSSYLKKVG--YNPDKIPFVPISGFE 197
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 25.8 bits (54), Expect = 9.1
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 17 KMRSVTVK--DVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFK 148
KM + T K D+IVK V+++LKK+G PD + V + F+
Sbjct: 154 KMDATTPKYSKARYDEIVKEVSSYLKKVG--YNPDKIPFVPISGFE 197
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 25.8 bits (54), Expect = 9.1
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 17 KMRSVTVK--DVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFK 148
KM + T K D+IVK V+++LKK+G PD + V + F+
Sbjct: 154 KMDATTPKYSKARYDEIVKEVSSYLKKVG--YNPDKIPFVPISGFE 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,956,355
Number of Sequences: 37544
Number of extensions: 169015
Number of successful extensions: 465
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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