Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0014_A02
(344 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 124 1e-29
AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 124 1e-29
Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical pr... 29 1.2
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 28 1.6
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 28 1.6
Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z82051-10|CAB04822.2| 577|Caenorhabditis elegans Hypothetical p... 26 6.3
Z70684-10|CAA94602.2| 684|Caenorhabditis elegans Hypothetical p... 26 6.3
U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical pr... 26 6.3
AL021175-11|CAA15973.2| 577|Caenorhabditis elegans Hypothetical... 26 6.3
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 26 8.3
>Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical
protein T05F1.3 protein.
Length = 146
Score = 124 bits (300), Expect = 1e-29
Identities = 57/107 (53%), Positives = 75/107 (70%)
Frame = +2
Query: 23 RSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAIL 202
R+ ++KDV+Q + K++A LKK GKVKVP+ DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 203 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALE 343
RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLE 108
>AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal
protein S19 protein.
Length = 146
Score = 124 bits (300), Expect = 1e-29
Identities = 57/107 (53%), Positives = 75/107 (70%)
Frame = +2
Query: 23 RSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAIL 202
R+ ++KDV+Q + K++A LKK GKVKVP+ DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 203 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALE 343
RH+Y R P G+ K++GG KR GV P+HF S+G+ RKA+Q LE
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLE 108
>Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical
protein T05F1.5 protein.
Length = 366
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 194 QHSVHKTNQGHREPVP*N--ELSLPSPYDLEPSLCRSFSSER 75
QH+ NQGHR P P + +LS P P + SL S R
Sbjct: 82 QHNRVGNNQGHRSPSPTSSPQLSSPPPSTMVDSLSTHSESSR 123
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 64 QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 153
+NCS + E+DR S G SYG + F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 64 QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 153
+NCS + E+DR S G SYG + F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189
>Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical
protein T21E8.2 protein.
Length = 1263
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 5 EAQGKMRSVTVKDVEQDKIVKTVAAHLKKIGK 100
EA MR+V ++E DKI+ ++ HL+KI K
Sbjct: 881 EALENMRTVRALNLE-DKIMSLISEHLQKIHK 911
>Z82051-10|CAB04822.2| 577|Caenorhabditis elegans Hypothetical
protein T23D5.2 protein.
Length = 577
Score = 26.2 bits (55), Expect = 6.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 162 MTLIGFMYAVLLYC 203
M ++GF YAV++YC
Sbjct: 212 MIILGFQYAVIIYC 225
>Z70684-10|CAA94602.2| 684|Caenorhabditis elegans Hypothetical
protein F28D1.9 protein.
Length = 684
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 38 KDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAIL 202
+DVE+ K V +L+++G + P + + + P+D D +RC L
Sbjct: 628 QDVEKTGTFKLVKTNLQRLGIMDAPSDSIYIYNSENRNFVPFDND---LRCKVSL 679
>U40941-5|AAA81710.1| 300|Caenorhabditis elegans Hypothetical
protein F35C8.5 protein.
Length = 300
Score = 26.2 bits (55), Expect = 6.3
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +1
Query: 259 WSQTQWCHTLSLLQIIW 309
W+Q W + ++L+Q+IW
Sbjct: 98 WNQLLWIYPMALVQLIW 114
>AL021175-11|CAA15973.2| 577|Caenorhabditis elegans Hypothetical
protein T23D5.2 protein.
Length = 577
Score = 26.2 bits (55), Expect = 6.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 162 MTLIGFMYAVLLYC 203
M ++GF YAV++YC
Sbjct: 212 MIILGFQYAVIIYC 225
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 4 RGTRQDAFRYSEGC*TRQNRQNCSRSLEKDRQSEGSRS 117
+ ++ R E +R N ++ SRS E+DR+ + SRS
Sbjct: 560 KSKKRSKSREKEQSSSRHNHRSRSRSSERDRRRKRSRS 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,644,196
Number of Sequences: 27780
Number of extensions: 147511
Number of successful extensions: 394
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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